Browse Element(s) Details


Os.32752.2.S1_s_at

Description gb:AK103032.1
DB_XREF= gi:32988241
TID=Os.32752.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (P0031D02.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117C14, full insert sequence.
FL= gb:AK103032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6091011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g553901/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein
LOC_Os01g60960Os.42531.1.S1_at11/111+35584410..35585972LOB domain protein 13, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32752.2.S1_s_at--727--10171Chr01:35558127..35558151 (25 bp)
TATAAGGCCAGCACTCAAGGATATT
LOC_Os01g60910
Os.32752.2.S1_s_at--817--5471Chr01:35558181..35558205 (25 bp)
GAACTCACAATCTATCCTGCAAGGA
LOC_Os01g60910
Os.32752.2.S1_s_at--949--8051Chr01:35558203..35558227 (25 bp)
GGAGAGCAGCAGCAGTCCCCATTGC
LOC_Os01g60910
Os.32752.2.S1_s_at--13--5911Chr01:35558233..35558257 (25 bp)
GAGCTACCACAGGATCAGTTGCAAC
LOC_Os01g60910
Os.32752.2.S1_s_at--98--951Chr01:35558282..35558306 (25 bp)
AGGACATGCCTGAACCACCGTTGTT
LOC_Os01g60910
Os.32752.2.S1_s_at--1079--1771Chr01:35558298..35558322 (25 bp)
ACCGTTGTTGCCACAAGTACCACAA
LOC_Os01g60910
Os.32752.2.S1_s_at--9--1471Chr01:35558325..35558349 (25 bp)
AGAAGTGCAAACATCTATCCCCGCA
LOC_Os01g60910
Os.32752.2.S1_s_at--1019--7112Chr01:35558401..35558425 (25 bp)
GTCATCCATGTTTGTATCCTTCTTT
LOC_Os01g60910
Os.32752.2.S1_s_at--556--571Chr01:35558416..35558440 (25 bp)
ATCCTTCTTTTATGTCTTTGCTGCT
LOC_Os01g60910
Os.32752.2.S1_s_at--19--4771Chr01:35558435..35558459 (25 bp)
GCTGCTTGTTTCTAATTCCTCTGGA
LOC_Os01g60910
Os.32752.2.S1_s_at--391--6091Chr01:35558532..35558556 (25 bp)
GAGTGTTACTCCTGAATTTTCGAAA
LOC_Os01g60910
Target Sequence 
TATAAGGCCAGCACTCAAGGATATTGTTTGGGTGTGGCAAGGTGATGAGCACCTGAACTCACAATCTATCCTGCAAGGAG
AGCAGCAGCAGTCCCCATTGCCACCAGAGCTACCACAGGATCAGTTGCAACCATCATTGCCACAACAGGAGAAGCAGGAC
ATGCCTGAACCACCGTTGTTGCCACAAGTACCACAAGAAGAAGTGCAAACATCTATCCCCGCAGAACAAACAAAGAATTA
GTTTTAACAGCCAACTGGTAATTCAAATGTTCTTGTCATCCATGTTTGTATCCTTCTTTTATGTCTTTGCTGCTTGTTTC
TAATTCCTCTGGAATTGCAAAGCTGTACCTGTTTGTACAGAAGTGCAATGCACTTCAATTTTGGAAACTACAAAGGAACA
CCTCCGAGTGTTACTCCTGAATTTTCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32752.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis