Browse Element(s) Details


Os.12798.1.S1_at

Description gb:NM_190392.1
DB_XREF= gi:34907867
GEN=P0031D02.22
TID=Os.12798.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.12798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D02.22 (P0031D02.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0031D02.22 (P0031D02.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6090011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60880Os.35344.3.S1_x_at11/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880Os.35344.18.S1_x_at9/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.2.S1_s_at8/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.3.S1_x_at5/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.5.S1_x_at4/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60880OsAffx.22940.1.S1_s_at2/111+35535819..35542127transposon protein, putative, Mutator sub-class
LOC_Os01g60890OsAffx.21772.1.S1_s_at11/111+35545907..35546374hypothetical protein
LOC_Os01g60900Os.12798.1.S1_at11/111+35551610..35553435expressed protein
LOC_Os01g60900OsAffx.11681.1.S1_at10/111+35551610..35553435expressed protein
LOC_Os01g60900Os.31147.2.S1_x_at1/111+35551610..35553435expressed protein
LOC_Os01g60910Os.32752.2.S1_s_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60910Os.32752.1.S1_at11/111+35555762..35561222CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g60920Os.50407.1.S1_at10/111+35564913..35567690F-box domain containing protein, expressed
LOC_Os01g60930Os.35704.1.S1_at11/111+35570772..35573426expressed protein
LOC_Os01g60940Os.35704.2.S1_at11/111+35574725..35575774expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12798.1.S1_at--454--4491Chr01:35552998..35553022 (25 bp)
GCCGGGCCGAGGTACTAGCACAGTA
LOC_Os01g60900
Os.12798.1.S1_at--794--10011Chr01:35553013..35553037 (25 bp)
TAGCACAGTACAGCAGTGCACTGCT
LOC_Os01g60900
Os.12798.1.S1_at--436--1531Chr01:35553024..35553048 (25 bp)
AGCAGTGCACTGCTGCCCGATCGAA
LOC_Os01g60900
Os.12798.1.S1_at--295--10551Chr01:35553072..35553096 (25 bp)
TTCATTATTGCGATGCGGGCCGGGA
LOC_Os01g60900
Os.12798.1.S1_at--853--8311Chr01:35553179..35553203 (25 bp)
GGCTCTGGAATTTGCGCGGCCCTAC
LOC_Os01g60900
Os.12798.1.S1_at--306--1511Chr01:35553263..35553287 (25 bp)
AGCACGAGGCAGTTGCTCGCTGCAC
LOC_Os01g60900
Os.12798.1.S1_at--608--9031Chr01:35553283..35553307 (25 bp)
TGCACGTGTCCAGGCAATCTGTTGA
LOC_Os01g60900
Os.12798.1.S1_at--548--6651Chr01:35553303..35553327 (25 bp)
GTTGATATGTTTTGGTTCTTCCTCC
LOC_Os01g60900
Os.12798.1.S1_at--232--10671Chr01:35553321..35553345 (25 bp)
TTCCTCCTTGTCCATTTGGATTTGG
LOC_Os01g60900
Os.12798.1.S1_at--373--6411Chr01:35553345..35553369 (25 bp)
GATCTTCGAAATCCCATTTGTATCT
LOC_Os01g60900
Os.12798.1.S1_at--1039--6491Chr01:35553381..35553405 (25 bp)
GATAGTCGTTATAGGCCATTTATGT
LOC_Os01g60900
Target Sequence 
GCCGGGCCGAGGTACTAGCACAGTACAGCAGTGCACTGCTGCCCGATCGAAGCGGCCGTCGCGCATGGGGCCGTTTCATT
ATTGCGATGCGGGCCGGGAGCACAGTGGCAGTGTGGACTGTTGCCGCGCCCGCGCGCGAATCGGGTGGAGGCGCGCGTGA
TGATGGCCTACTGGGCTGCTNGGGCTCTGGAATTTGCGCGGCCCTACCACGAGGAGCGGTGGCATGGGGTTGTACGGCGC
GTGCTNCAAAGGGAAGCGAGAAGGGGAGCACGAGGCAGTTGCTCGCTGCACGTGTCCAGGCAATCTGTTGATATGTTTTG
GTTCTTCCTCCTTGTCCATTTGGATTTGGATCTTCGAAATCCCATTTGTATCTTTGTGAGAAATGATAGTCGTTATAGGC
CATTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis