Browse Element(s) Details


Os.43236.1.S1_at

Description gb:CR278677
DB_XREF= gi:44665243
DB_XREF=CR278677
CLONE=p686h08p3
TID=Os.43236.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.2 (OSJNBa0077M12.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g325209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32490NANA8+19995263..19995622hypothetical protein
LOC_Os08g32500Os.53608.1.A1_at11/118+19996905..20000825permease, putative, expressed
LOC_Os08g32510NANA8+20003667..20004136hypothetical protein
LOC_Os08g32520Os.43236.1.S1_at9/118+20011464..20012574expressed protein
LOC_Os08g32530OsAffx.17296.1.S1_x_at11/118+20018462..20019765hypothetical protein
LOC_Os08g32540OsAffx.29475.2.S1_s_at11/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32540OsAffx.29475.2.S1_at5/118+20023146..20028100Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g32550NANA8+20029908..20030588Zinc knuckle family protein
LOC_Os08g32560OsAffx.17297.1.S1_at11/118+20032192..20032860hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005874cellular_componentmicrotubule
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43236.1.S1_at--400--2751Chr08:20012111..20012135 (25 bp)
AAGAACAGAGGCGACCCTCCGATCA
LOC_Os08g32520
Os.43236.1.S1_at--125--3851Chr08:20012321..20012345 (25 bp)
CTGCAGAGCATCTCGGAGTCGGCGA
LOC_Os08g32520
Os.43236.1.S1_at--217--1151Chr08:20012337..20012361 (25 bp)
AGTCGGCGAGCTGACATCGTACGGC
LOC_Os08g32520
Os.43236.1.S1_at--68--7011Chr08:20012355..20012379 (25 bp)
GTACGGCCAGGATTAAACTACGATT
LOC_Os08g32520
Os.43236.1.S1_at--431--1331Chr08:20012441..20012465 (25 bp)
AGAGTTCTCGGTTAGGTCAAGCGTA
LOC_Os08g32520
Os.43236.1.S1_at--1059--2671Chr08:20012459..20012483 (25 bp)
AAGCGTAGCTGCTGGCTTGCACAGT
LOC_Os08g32520
Os.43236.1.S1_at--162--10751Chr08:20012475..20012499 (25 bp)
TTGCACAGTGAAGAACTCGCAGCTT
LOC_Os08g32520
Os.43236.1.S1_at--563--5451Chr08:20012487..20012511 (25 bp)
GAACTCGCAGCTTCAGAATTTTCAG
LOC_Os08g32520
Os.43236.1.S1_at--196--6951Chr08:20012513..20012537 (25 bp)
GTAGTTTTGCAACGAACAGCACAGG
LOC_Os08g32520
Os.43236.1.S1_at--235--151Chr08:20012552..20012576 (25 bp)
ATTACTGCTGTAGTTTACTGCTTGC
NONE
Os.43236.1.S1_at--916--9911Chr08:20012567..20012591 (25 bp)
TACTGCTTGCTACTGCTAGGATGGT
NONE
Target Sequence 
AAGAACAGAGGCGACCCTCCGATCACCAGGAGCGGAAGCCGGCGGAGAAAGACCGGCACCGGAGCAGCGGCGGCGGCGGC
GGCGGCAGAGGGCGGAATTGGCGGCCGTCGCTGCAGAGCATCTCGGAGTCGGCGAGCTGACATCGTACGGCCAGGATTAA
ACTACGATTAGTACAGGAGGGTTTGGTTTGGAAATTGGGGAGGTAGAAATCAGAAATGTAAATTAGGTGAAGAGTTCTCG
GTTAGGTCAAGCGTAGCTGCTGGCTTGCACAGTGAAGAACTCGCAGCTTCAGAATTTTCAGAGTAGTTTTGCAACGAACA
GCACAGGNTNGNTAATTAATAATTACTGCTGTAGTTTACTGCTTGCTACTGCTAGGATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis