Browse Element(s) Details


Os.4600.1.S1_at

Description gb:AB098063.1
DB_XREF= gi:33354148
GEN=OsSPDS2
TID=Os.4600.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4600 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsSPDS2 mRNA for aminopropyl transferase, complete cds.
PROD=aminopropyl transferase
FL= gb:AK067301.1 gb:AB098063.1 gb:AK068518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3371010/11Spermidine synthase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33650OsAffx.27917.1.S1_at10/116+19585428..19588626hypothetical protein
LOC_Os06g33650OsAffx.1755.1.S1_x_at2/116+19585428..19588626hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.2.S1_x_at10/116+19592749..19594298hypothetical protein
LOC_Os06g33660OsAffx.27918.1.S1_x_at1/116+19592749..19594298hypothetical protein
LOC_Os06g33669NANA6+19596284..19596641NA
LOC_Os06g33680OsAffx.27919.1.S1_at11/116+19598280..19602399hypothetical protein
LOC_Os06g33690Os.55529.1.S1_at2/116+19603065..19605119CAPIP1, putative, expressed
LOC_Os06g33700OsAffx.27920.1.S1_at11/116+19609357..19609802hypothetical protein
LOC_Os06g33710Os.4600.1.S1_at10/116+19613317..19618692Spermidine synthase 2, putative, expressed
LOC_Os06g33720Os.54557.1.S1_at10/116+19618926..19620613Flavin-binding monooxygenase-like family protein, expressed
LOC_Os06g33730OsAffx.4994.1.S1_at11/116+19627998..19628393hypothetical protein
LOC_Os06g33739Os.10731.2.A1_at1/116+19633177..19634533retrotransposon protein, putative, unclassified
LOC_Os06g33750NANA6+19636471..19641628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33759Os.10731.2.A1_at1/116+19642415..19643771retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0008295biological_processspermidine biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0004766molecular_functionspermidine synthase activity
GO:0016768molecular_functionspermine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4600.1.S1_at--818--6691NONE
GTTCCTACCTATCCTAGTGGTGTCA
NONE
Os.4600.1.S1_at--866--7131Chr06:19617823..19617847 (25 bp)
GTCATTGGTTTTTTGCTATGTGCGA
LOC_Os06g33710
Os.4600.1.S1_at--328--5311Chr06:19617850..19617874 (25 bp)
GAAGGTCCAGCAGTGAACTTCCTTT
LOC_Os06g33710
Os.4600.1.S1_at--954--10671Chr06:19617868..19617892 (25 bp)
TTCCTTTCTCCTGTGAATCCAATTG
LOC_Os06g33710
Os.4600.1.S1_at--465--131Chr06:19617941..19618117 (25 bp)
ATTCAGAGGTTCATCGGGCTGCTTT
LOC_Os06g33710
Os.4600.1.S1_at--1155--7571Chr06:19618108..19618132 (25 bp)
GGGCTGCTTTTGTTCTGCCAACATT
LOC_Os06g33710
Os.4600.1.S1_at--1102--2251Chr06:19618296..19618320 (25 bp)
AAATCAGAAACCAAGCCAGTCGCGA
LOC_Os06g33710
Os.4600.1.S1_at--1067--3011Chr06:19618340..19618364 (25 bp)
AATGCCGAATAGTGCCATTCCGACT
LOC_Os06g33710
Os.4600.1.S1_at--665--8811Chr06:19618364..19618388 (25 bp)
TGCTTCCTAGATTCGGGCGGCCATA
LOC_Os06g33710
Os.4600.1.S1_at--983--7571Chr06:19618378..19618402 (25 bp)
GGGCGGCCATATGCGACAACCATGT
LOC_Os06g33710
Os.4600.1.S1_at--338--751Chr06:19618581..19618605 (25 bp)
ATGTATATTGTCACAGCACTGATGT
LOC_Os06g33710
Target Sequence 
GTTCCTACCTATCCTAGTGGTGTCATTGGTTTTTTGCTATGTGCGAAAGAAGGTCCAGCAGTGAACTTCCTTTCTCCTGT
GAATCCAATTGAGAAACTGGAAGGAGCTATGGAAGCTGGAAGGGAAATCAGATTTTACAATTCAGAGGTTCATCGGGCTG
CTTTTGTTCTGCCAACATTTGTAAGGAGAGAACTGGAATCACACAATACTTGTGCTGAAAAGGATAAATCAGAAACCAAG
CCAGTCGCGAAACCAAAGAAGATGAAAATAATGCCGAATAGTGCCATTCCGACTGCTTCCTAGATTCGGGCGGCCATATG
CGACAACCATGTTCGACGTCCTTAGCTACAGTATATGCCAACTATAAGAGGAGAATGTCGCTGTAACTCTTCTGTCTTAA
GTATGGTATGTTATGCCTGACTGAATAAAAGGGAGGAACAGATGAGATGTGAACCAAAATAATGTTCTTCCTGATCCGTG
AGCACTGTTGTAGTGTTGCCTGTTGTACAAATGTATATTGTCACAGCACTGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis