Browse Element(s) Details


Os.46050.1.A1_x_at

Description gb:CF317972
DB_XREF= gi:33689733
DB_XREF=HD--07-N20.g1
CLONE=HD--07-N20
TID=Os.46050.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46050 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057E11.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g096502/11expressed protein
LOC_Os11g202391/11expressed protein
LOC_Os04g065901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g09590NANA9+5172915..5173313hypothetical protein
LOC_Os09g09600OsAffx.29780.1.S1_at9/119+5175165..5178300hypothetical protein
LOC_Os09g09610OsAffx.29781.1.S1_at11/119+5181571..5182636hypothetical protein
LOC_Os09g09619OsAffx.9066.1.S1_x_at1/119+5185168..5186329NA
LOC_Os09g09630OsAffx.17620.1.S1_at11/119+5186993..5189200WRKY DNA binding domain containing protein
LOC_Os09g09640NANA9+5190398..5190983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g09650Os.36393.1.S1_at11/119+5196975..5200335expressed protein
LOC_Os09g09650Os.46050.1.A1_x_at2/119+5196975..5200335expressed protein
LOC_Os09g09660NANA9+5201340..5204432retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g09670OsAffx.29782.1.S1_at11/119+5213964..5214838hypothetical protein
LOC_Os09g09670OsAffx.31133.2.S1_at1/119+5213964..5214838hypothetical protein
LOC_Os09g09680NANA9+5222688..5228798retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46050.1.A1_x_at--335--9575Chr12:11546268..11546292 (25 bp)
TCTTCTCTCGGCTCACTGTGAGGCA
NONE
Os.46050.1.A1_x_at--297--1611Chr07:26102307..26102572 (25 bp)
AGCTGACAGGTCTTGAGGATTCTTC
NONE
Os.46050.1.A1_x_at--851--4751Chr07:26102306..26102571 (25 bp)
GCTGACAGGTCTTGAGGATTCTTCT
NONE
Os.46050.1.A1_x_at--559--8014Chr09:5207416..5207439 (24 bp)
GGAGGACCCCTGTGATTATTATTAC
NONE
Os.46050.1.A1_x_at--135--8111Chr07:26101319..26101343 (25 bp)
GGACCCCTGTGATTATTATTACGAT
NONE
Os.46050.1.A1_x_at--73--8691Chr07:26101312..26101336 (25 bp)
TGTGATTATTATTACGATGACTCTG
NONE
Os.46050.1.A1_x_at--900--10213Chr09:5207024..5207459 (25 bp)
TATTACGATGACTCTGATAACTTAG
NONE
Os.46050.1.A1_x_at--587--3851Chr07:26101288..26101314 (25 bp)
CTGATAACTTAGAATTCCTAGAGGT
NONE
Os.46050.1.A1_x_at--871--9791Chr07:26101284..26101310 (25 bp)
TAACTTAGAATTCCTAGAGGTTATA
NONE
Os.46050.1.A1_x_at--565--6631Chr07:26101229..26101253 (25 bp)
GTTGTGTAATATTAGCACCTATGTA
NONE
Os.46050.1.A1_x_at--895--1493Chr10:10076628..10076658 (25 bp)
AGCACCTATGTAGGTGAGTACCTAC
NONE
Target Sequence 
TCTTCTCTCGGCTCACTGTGAGGCAGAGAAAAGAAGAGACGGAAGAAGAAGAAGCAAAAGAAAAAGGAAGCTGACAGGTC
TTGAGGATTCTTCTGACACACTAGATAATATCATTCAATCTCAGGACATCGAGCAAGATTTGGGTCAAGAGGAGGACCCC
TGTGATTATTATTACGATGACTCTGATAACTTAGAATTCCTAGAGGTTATACCTTTCTAGTCAGAATGTACTAGAACTTC
CGTTGTGTAATATTAGCACCTATGTAGGTGAGTACCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46050.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis