Browse Element(s) Details


Os.46432.1.S1_s_at

Description gb:AA753964
DB_XREF= gi:2800670
DB_XREF=97BS0421
CLONE=97BS0421
TID=Os.46432.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46432 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6994011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46432.1.S1_s_at--858--7911Chr01:40770176..40770200 (25 bp)
GGTTGAGATTTCACACATTCCGGAT
LOC_Os01g69940
Os.46432.1.S1_s_at--714--4271Chr01:40770082..40770106 (25 bp)
CCTGTGGTTGTTTTTGTATCTCGCT
LOC_Os01g69940
Os.46432.1.S1_s_at--501--6511Chr01:40770048..40770072 (25 bp)
GATATCGTTTGGTCTATCATCTAGA
LOC_Os01g69940
Os.46432.1.S1_s_at--745--7171Chr01:40770013..40770037 (25 bp)
GTCGGCACTACACCAACTGGTTTAA
LOC_Os01g69940
Os.46432.1.S1_s_at--473--2891Chr01:40769971..40769995 (25 bp)
AAGGTCCTTGCCAGAAGGCTGGACA
LOC_Os01g69940
Os.46432.1.S1_s_at--1019--7131Chr01:40769931..40769955 (25 bp)
GTCTTGGTTTTTTGCTTGTTTTCAT
LOC_Os01g69940
Os.46432.1.S1_s_at--563--3591Chr01:40769909..40769933 (25 bp)
CATTATCATGATATCGTCTCGTCTT
LOC_Os01g69940
Os.46432.1.S1_s_at--983--9391Chr01:40769896..40769920 (25 bp)
TCGTCTCGTCTTCAGTGTGTATTAC
LOC_Os01g69940
Os.46432.1.S1_s_at--91--10211Chr01:40769870..40769894 (25 bp)
TATTTCTGAATCTGCAGTCATCTGC
LOC_Os01g69940
Os.46432.1.S1_s_at--1050--1151Chr01:40769855..40769879 (25 bp)
AGTCATCTGCCCAAAAACTGAGTAT
LOC_Os01g69940
Os.46432.1.S1_s_at--849--7571Chr01:40769808..40769832 (25 bp)
GGGCTGAACTGATGCTCCTGGGTCT
LOC_Os01g69940
Target Sequence 
GGTTGAGATTTCACACATTCCGGATCATNGNGCCTATCNTTAGANATTNCCGTCTTACCGTGAGAAGNTTATCTGTCATG
TACAAAATCATGTAACCTGTGGTTGTTTTTGTATCTCGCTGAAGCAATCGATATCGTTTGGTCTATCATCTAGAGGAATT
TGGGGTCGGCACTACACCAACTGGTTTAAGTCTTCTTAGAGATATTAAGGTCCTTGCCAGAAGGCTGGACAGAAGACATC
TGTTTAGTCTTGGTTTTTTGCTTGTTTTCATTATCATGATATCGTCTCGTCTTCAGTGTGTATTACTTATTTCTGAATCT
GCAGTCATCTGCCCAAAAACTGAGTATGTACTCTCTATAGTAATAACTGGGGCTGAACTGATGCTCCTGGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46432.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis