Browse Element(s) Details


Os.5554.1.S1_at

Description gb:CB654096
DB_XREF= gi:29657821
DB_XREF=OSJNEc05L23.r
CLONE=OSJNEc05L23
TID=Os.5554.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5554 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564278.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6994011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69930Os.54562.1.S1_at11/111+40765082..40769293DnaJ domain containing protein, expressed
LOC_Os01g69940Os.46432.1.S1_s_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69940Os.5554.1.S1_at11/111+40769786..40773120F-box family protein, putative, expressed
LOC_Os01g69950Os.51456.1.S1_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.4997.1.S1_s_at11/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69950Os.46403.1.S1_at8/111+40780707..4078352850S ribosomal protein L27, chloroplast precursor, putative, expressed
LOC_Os01g69960Os.23498.1.S1_at11/111+40786850..40788332expressed protein
LOC_Os01g69970Os.6419.1.S1_at11/111+40789858..40794608Periodic tryptophan protein 1 homolog, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5554.1.S1_at--1014--9231Chr01:40770362..40770386 (25 bp)
TCCTTGAAGGCGAAGCGGATGAACC
LOC_Os01g69940
Os.5554.1.S1_at--563--7991Chr01:40770346..40770370 (25 bp)
GGATGAACCGCCTCGTGACATACAA
LOC_Os01g69940
Os.5554.1.S1_at--14--4211Chr01:40770339..40770363 (25 bp)
CCGCCTCGTGACATACAACCTTTTG
LOC_Os01g69940
Os.5554.1.S1_at--448--631Chr01:40770284..40770308 (25 bp)
ATGCTCCCATGCAGCCGCAAAAAGC
LOC_Os01g69940
Os.5554.1.S1_at--728--7531Chr01:40770247..40770271 (25 bp)
GTGGCACAGCATTTGGTCCATGCCC
LOC_Os01g69940
Os.5554.1.S1_at--559--2151Chr01:40770242..40770266 (25 bp)
ACAGCATTTGGTCCATGCCCCTCTG
LOC_Os01g69940
Os.5554.1.S1_at--757--4412Chr04:34695567..34695937 (25 bp)
GCCTTGGCCTGACAGTTTTTTTTCA
NONE
Os.5554.1.S1_at--229--2071Chr01:40770162..40770186 (25 bp)
ACATTCCGGATCATTGGCCTATCCT
LOC_Os01g69940
Os.5554.1.S1_at--157--7971Chr01:40770155..40770179 (25 bp)
GGATCATTGGCCTATCCTTAGATAT
LOC_Os01g69940
Os.5554.1.S1_at--359--8431Chr01:40770147..40770171 (25 bp)
GGCCTATCCTTAGATATTTCCGTCT
LOC_Os01g69940
Os.5554.1.S1_at--826--4251Chr01:40770140..40770164 (25 bp)
CCTTAGATATTTCCGTCTTACCGTG
LOC_Os01g69940
Target Sequence 
TCCTTGAAGGCGAAGCGGATGAACCGCCTCGTGACATACAACCTTTTGAACAAGGAGTGGCAGAAGGTTCCTGATTGCAT
GCTCCCATGCAGCCGCAAAAAGCAGTGGATAGCATGTGGCACAGCATTTGGTCCATGCCCCTCTGCCTTGGCCTGACAGT
TTTTTTTCACTTTCTTCACCAAAGGTGGTTGAGATTTCACACATTCCGGATCATTGGCCTATCCTTAGATATTTCCGTCT
TACCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis