Browse Element(s) Details


Os.46471.1.S1_at

Description gb:AK073552.1
DB_XREF= gi:32983575
TID=Os.46471.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46471 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0045C13.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046G12, full insert sequence.
FL= gb:AK073552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2065010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20619NANA10+10076232..10076576NA
LOC_Os10g20630Os.20462.1.S1_at11/1110+10079769..10087133Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os10g20640NANA10+10088174..10088437hypothetical protein
LOC_Os10g20650Os.46471.1.S1_at10/1110+10096322..10100533expressed protein
LOC_Os10g20660NANA10+10108177..10113353retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g20670OsAffx.27025.1.S1_at1/1110+10116880..10120351hypothetical protein
LOC_Os10g20670OsAffx.32166.1218.S1_x_at1/1110+10116880..10120351hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46471.1.S1_at--702--2971Chr10:10098717..10098741 (25 bp)
AATGGATTACGCCTGCAGCCAGGAT
LOC_Os10g20650
Os.46471.1.S1_at--760--2491Chr10:10098641..10098665 (25 bp)
AACATCGCGGCGCATGCGTCGTATG
LOC_Os10g20650
Os.46471.1.S1_at--777--4651Chr10:10098626..10098650 (25 bp)
GCGTCGTATGCGTTCAATAGCTACT
LOC_Os10g20650
Os.46471.1.S1_at--667--5891Chr10:10098576..10098600 (25 bp)
GAGCTGCAGCTTTGGTGGTACTGCT
LOC_Os10g20650
Os.46471.1.S1_at--531--4731Chr10:10098554..10098578 (25 bp)
GCTGTGCTTATCAATTCTGACCCAA
LOC_Os10g20650
Os.46471.1.S1_at--155--3071NONE
AATCTTCTATTTGGGTTCGTTGAGC
NONE
Os.46471.1.S1_at--485--871Chr10:10096598..10096622 (25 bp)
ATGGCCGATGGTTGCATTGTGCTGC
LOC_Os10g20650
Os.46471.1.S1_at--598--7311Chr10:10096580..10096604 (25 bp)
GTGCTGCGAAACATCAAGTCTCATT
LOC_Os10g20650
Os.46471.1.S1_at--763--2231Chr10:10096449..10096473 (25 bp)
ACAATTTCTCTGCTTGGCTCATGGT
LOC_Os10g20650
Os.46471.1.S1_at--1092--8451Chr10:10096425..10096449 (25 bp)
TGGCCTGGAGGTACTCAGCATCTTG
LOC_Os10g20650
Os.46471.1.S1_at--525--6491Chr10:10096365..10096389 (25 bp)
GATACCTCAATTGGAACCTGCATGC
LOC_Os10g20650
Target Sequence 
AATGGATTACGCCTGCAGCCAGGATGGGGTGGATTGCCAGGAGATTTCGGGCGGGGGAAGCTGCTTCTACCCGGACAACA
TCGCGGCGCATGCGTCGTATGCGTTCAATAGCTACTGGCAGAAGATGAAGCATATTGGTGGGAGCTGCAGCTTTGGTGGT
ACTGCTGTGCTTATCAATTCTGACCCAAGTNNNNNNNNNNNNNNCTNNNTNNTGNNTNNANNAATGCTGAACTTGAATCT
TCTATTTGGGTTCGTTGAGCGAAGCGAAGATCTGGATCTCTTGATGGCCGATGGTTGCATTGTGCTGCGAAACATCAAGT
CTCATTTTTTTTGCCCATCCGGGGTCCTCTGTTAGGACGCCGNGCTGATGTAGGATTGCTATATGTTAAAAGTCAGATTN
GATGCATAGTTTCGTCTGANNACTGTTAGAGCACAATTTCTCTGCTTGGCTCATGGTGGCCTGGAGGTACTCAGCATCTT
GCTGCTGGCCACANGATGATTATGTAAGGCAGAAAAGATACCTCAATTGGAACCTGCATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis