Browse Element(s) Details


Os.46519.3.A1_at

Description gb:NM_196445.1
DB_XREF= gi:37534249
TID=Os.46519.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46519 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative gypsy-type retrotransposon RIRE2 (OSJNBa0049A03.11), mRNA.
PROD=putative gypsy-type retrotransposon RIRE2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2695011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26920OsAffx.22722.1.S1_x_at1/1110+13827358..13833264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g26930OsAffx.20354.1.S1_at11/1110+13833831..13836701retrotransposon protein, putative, unclassified
LOC_Os10g26940Os.37718.1.S1_at11/1110+13839897..13841440BURP domain containing protein, expressed
LOC_Os10g26950Os.46519.3.A1_at11/1110+13856100..13859737retrotransposon protein, putative, unclassified
LOC_Os10g26960Os.51841.1.S1_x_at1/1110+13864429..13866994Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46519.3.A1_at--853--4711Chr10:13856967..13856991 (25 bp)
GCTGGCACACCGTTGGTCGGCGCCT
LOC_Os10g26950
Os.46519.3.A1_at--376--8811Chr10:13856709..13856733 (25 bp)
TGTTCCGGCCAACTATCGCAGTGTG
LOC_Os10g26950
Os.46519.3.A1_at--761--2031Chr10:13856698..13856722 (25 bp)
ACTATCGCAGTGTGTTGGCTGATCC
LOC_Os10g26950
Os.46519.3.A1_at--677--8851Chr10:13856679..13856703 (25 bp)
TGATCCCAACTGGTGCACTGCCATG
LOC_Os10g26950
Os.46519.3.A1_at--858--2891Chr10:13856513..13856536 (24 bp)
AAGGTAGTCCGTGGATACTCCCAGC
LOC_Os10g26950
Os.46519.3.A1_at--632--10871Chr10:13856400..13856424 (25 bp)
TTGGCCGATTCATCAGCTAGATGTG
LOC_Os10g26950
Os.46519.3.A1_at--631--6971Chr10:13856235..13856259 (25 bp)
GTACCAGCGGTTTGCTAGGTATATT
LOC_Os10g26950
Os.46519.3.A1_at--24--4871Chr10:13856222..13856246 (25 bp)
GCTAGGTATATTCAACAGATGGGTT
LOC_Os10g26950
Os.46519.3.A1_at--1030--6251Chr10:13856205..13856229 (25 bp)
GATGGGTTTTATGCCTTCAGCATCC
LOC_Os10g26950
Os.46519.3.A1_at--253--10531Chr10:13856190..13856214 (25 bp)
TTCAGCATCCAATACATCTCTCTTT
LOC_Os10g26950
Os.46519.3.A1_at--299--9571Chr10:13856136..13856160 (25 bp)
TCTTCTGCTGTACGTCGATGACATT
LOC_Os10g26950
Target Sequence 
GCTGGCACACCGTTGGTCGGCGCCTCCTCGACCGGTGTTGCCCCATCGGCCGCTACCCATGCCACCGCCTCTCCTGTTCC
GGCCAACTATCGCAGTGTGTTGGCTGATCCCAACTGGTGCACTGCCATGGCCGACGAGTACAAGGTAGTCCGTGGATACT
CCCAGCAGCACGACATCGACTACGACGAGACATTTAGCCCGGTTGTCAAGCCAGCCACAATACGGGTTGTTCTCAGCATC
GCTGCCTCCCGTGCTTGGCCGATTCATCAGCTAGATGTGAAGAACACATTTCTTCATGGTCACCTAAAGGAGATCGTCTA
CTGTCAGCAACCCTCCGGGTTTGTTGATCCTGCTGCCCCTGATGCTGTCTGTCTATTGCCGAAGTCCCTGTACGGTCTCA
AGCAGGCTCCTCGTGCATGGTACCAGCGGTTTGCTAGGTATATTCAACAGATGGGTTTTATGCCTTCAGCATCCAATACA
TCTCTCTTTGTTTACAAAGATGGAGATCACATTGCCTATCTTCTGCTGTACGTCGATGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46519.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis