Browse Element(s) Details


Os.46565.2.S1_x_at

Description gb:AK100863.1
DB_XREF= gi:32986072
TID=Os.46565.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46565 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068N06.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023123O11, full insert sequence.
FL= gb:AK100863.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31200OsAffx.1755.1.S1_x_at1/1110+16026909..16030201retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31220NANA10+16042158..16046457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g31240Os.46565.2.S1_x_at11/1110+16053967..16057134expressed protein
LOC_Os10g31250OsAffx.20295.1.S1_at11/1110+16059064..16064038expressed protein
LOC_Os10g31250OsAffx.28164.2.S1_at2/1110+16059064..16064038expressed protein
LOC_Os10g31250Os.52574.2.S1_x_at1/1110+16059064..16064038expressed protein
LOC_Os10g31280OsAffx.18472.1.S1_at11/1110+16077908..16078688hypothetical protein
LOC_Os10g31290Os.46672.1.S1_at11/1110+16079569..16086346expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46565.2.S1_x_at--675--4611Chr10:16056581..16056605 (25 bp)
GCGAGCTCATGGTGCGGCTCAAGAA
LOC_Os10g31240
Os.46565.2.S1_x_at--819--5051Chr10:16056638..16056662 (25 bp)
GCAGCATCCTGGACGTGGCGTTCCA
LOC_Os10g31240
Os.46565.2.S1_x_at--774--1311Chr10:16056716..16056740 (25 bp)
AGATGGCGAACCTCATCCTGCTGGA
LOC_Os10g31240
Os.46565.2.S1_x_at--581--9271Chr10:16056731..16056755 (25 bp)
TCCTGCTGGAGCAAGGGAGCCCGCA
LOC_Os10g31240
Os.46565.2.S1_x_at--1028--9631Chr10:16056890..16056914 (25 bp)
TCAGGAGGCTCTGCGACGGCATCAT
LOC_Os10g31240
Os.46565.2.S1_x_at--971--5771Chr10:16056928..16056952 (25 bp)
GACGACGCATACAACTACCTCAGGC
LOC_Os10g31240
Os.46565.2.S1_x_at--549--9491Chr10:16057004..16057028 (25 bp)
TCTGCTGGGTGCGAGGACACGCCAA
LOC_Os10g31240
Os.46565.2.S1_x_at--836--9071Chr10:16057046..16057070 (25 bp)
TGCTTCTCGGCATCGTTGCCATCAT
LOC_Os10g31240
Os.46565.2.S1_x_at--191--431Chr10:16057066..16057090 (25 bp)
ATCATCACTCTGCTTTGCTTCATCG
LOC_Os10g31240
Os.46565.2.S1_x_at--992--10711Chr10:16057080..16057104 (25 bp)
TTGCTTCATCGTGCAGCAGCTGCAG
LOC_Os10g31240
Os.46565.2.S1_x_at--883--3311Chr10:16057110..16057134 (25 bp)
CACTCTGAGGAAGAACGCAACTTAG
LOC_Os10g31240
Target Sequence 
GCGAGCTCATGGTGCGGCTCAAGAAGCTGGAGATCGGAGGCAAGGCGGCTCCGGCGGGCAGCATCCTGGACGTGGCGTTC
CACGGCGGCGTGCTGGAGATCCCGCGGCTGGAGATCGACGGCGGCACGTGGAGGCAGATGGCGAACCTCATCCTGCTGGA
GCAAGGGAGCCCGCACGTGGGGCTCTACGTCACGGCGTACTGCGCCTTCATGTCGCAGCTCGCCGGCACCGCCGAGGACG
TGGCGCTGCTCTGCGAGTCCGGGGTCATCGAGCACCAGCTCGGCGGCGACGGCGACGTCGCCGACGGGCTCAGGAGGCTC
TGCGACGGCATCATCTTCGACGCCGACGACGACGCATACAACTACCTCAGGCCGGTGTACCGGGCGGTCGAGGAGCACTG
CCGCAGCCGCACGCTGAGGCTGCTCTGCTGGGTGCGAGGACACGCCAACTGCCCCAACCCATGGCTGCTTCTCGGCATCG
TTGCCATCATCACTCTGCTTTGCTTCATCGTGCAGCAGCTGCAGCACGCCACTCTGAGGAAGAACGCAACTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46565.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis