Browse Element(s) Details


Os.46686.1.S1_at

Description gb:AK119317.1
DB_XREF= gi:37988940
TID=Os.46686.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative myosin heavy chain (OSJNBa0011L09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H06, full insert sequence.
FL= gb:AK119317.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2556011/11myosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25530NANA10+12868472..12875130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25540OsAffx.20380.2.S1_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25540OsAffx.20380.2.S1_x_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25544NANA10+12883438..12884489hypothetical protein
LOC_Os10g25550Os.46687.1.S1_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25550Os.46687.1.S1_x_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25560Os.46686.1.S1_at11/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25560Os.40082.1.A1_x_at1/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030048biological_processactin filament-based movement
GO:0016459cellular_componentmyosin
GO:0003774molecular_functionmotor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46686.1.S1_at--348--211Chr10:12900478..12900612 (25 bp)
ATTTGTCCGGCGTTAAGTGTGAGGC
LOC_Os10g25560
Os.46686.1.S1_at--93--831Chr10:12900414..12900438 (25 bp)
ATGGTACCCACAGTGTATCAGCCGA
LOC_Os10g25560
Os.46686.1.S1_at--831--6891Chr10:12900312..12900424 (25 bp)
GTATCAGCCGAGGTTGTTGCCAAAA
LOC_Os10g25560
Os.46686.1.S1_at--246--6311Chr10:12900136..12900255 (25 bp)
GATGACGACTTGAGCATTCCTTTCA
LOC_Os10g25560
Os.46686.1.S1_at--56--10631Chr10:12900045..12900069 (25 bp)
TTCGTCATGTACACTCTGCTCAGTT
LOC_Os10g25560
Os.46686.1.S1_at--101--8871Chr10:12900018..12900042 (25 bp)
TGATGCAGCACCTTCAGACAACGTA
LOC_Os10g25560
Os.46686.1.S1_at--303--6991Chr10:12899996..12900020 (25 bp)
GTACCCGCTAAGATGAATTTGCCTA
LOC_Os10g25560
Os.46686.1.S1_at--275--211Chr10:12899980..12900004 (25 bp)
ATTTGCCTAGGCGTGTTATCTGATA
LOC_Os10g25560
Os.46686.1.S1_at--1074--7471Chr10:12899896..12899920 (25 bp)
GTGGTTTGCCTAGATTTTTCTCAGT
LOC_Os10g25560
Os.46686.1.S1_at--947--9511Chr10:12899878..12899902 (25 bp)
TCTCAGTATGACTCGGTGATCCACT
LOC_Os10g25560
Os.46686.1.S1_at--1152--9071Chr10:12899840..12899864 (25 bp)
TGCTTTGTTGCCATGCCTAGCACAA
LOC_Os10g25560
Target Sequence 
ATTTGTCCGGCGTTAAGTGTGAGGCAGATATATCGTCTATGTACGATGTACTGGGATGACAAATATGGTACCCACAGTGT
ATCAGCCGAGGTTGTTGCCAAAATGAGGGACATGGTGAGCAGCGATGCACAAAATCCAGTGTCAAATTCATTTCTCTTGG
ATGACGACTTGAGCATTCCTTTCACGACAGAGGAGATAGCAGAGGAAGTACCGGACATAGACATGNCAAACATCGAGATG
CCCTCATCACTTCGTCATGTACACTCTGCTCAGTTCCTGATGCAGCACCTTCAGACAACGTACCCGCTAAGATGAATTTG
CCTAGGCGTGTTATCTGATAGGCGATAAGNATGATCCAATTGCTTAGTTAGAGAGGAATTTTAAGTCAGTAATCATCATG
TGGTTTGCCTAGATTTTTCTCAGTATGACTCGGTGATCCACTNAAAATGGCGCATTGCTTTGTTGCCATGCCTAGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46686.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis