Browse Element(s) Details


Os.46687.1.S1_x_at

Description gb:AK121848.1
DB_XREF= gi:37991471
TID=Os.46687.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine protein kinase (OSJNBa0011L09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101K14, full insert sequence.
FL= gb:AK121848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2555011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25517OsAffx.21171.3.S1_x_at5/1110+12864973..12865386retrotransposon protein, putative, unclassified
LOC_Os10g25530NANA10+12868472..12875130retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25540OsAffx.20380.2.S1_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25540OsAffx.20380.2.S1_x_at11/1110+12879394..12881298retrotransposon protein, putative, unclassified
LOC_Os10g25544NANA10+12883438..12884489hypothetical protein
LOC_Os10g25550Os.46687.1.S1_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25550Os.46687.1.S1_x_at11/1110+12888521..12894729serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g25560Os.46686.1.S1_at11/1110+12899775..12906412myosin, putative, expressed
LOC_Os10g25560Os.40082.1.A1_x_at1/1110+12899775..12906412myosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46687.1.S1_x_at--1004--5231Chr10:12889091..12889279 (25 bp)
GAATACATCATGACTGGTCATCTAA
LOC_Os10g25550
Os.46687.1.S1_x_at--502--8591Chr10:12889077..12889100 (24 bp)
TGGTCATCTAACGACAAAGAGCGAT
LOC_Os10g25550
Os.46687.1.S1_x_at--413--8771Chr10:12889051..12889075 (25 bp)
TGTATAGCTATGGTGTGGTGCTGCT
LOC_Os10g25550
Os.46687.1.S1_x_at--449--8671Chr10:12889038..12889062 (25 bp)
TGTGGTGCTGCTGGAGCTACTAACC
LOC_Os10g25550
Os.46687.1.S1_x_at--342--4711Chr10:12889029..12889053 (25 bp)
GCTGGAGCTACTAACCGGACGGAAA
LOC_Os10g25550
Os.46687.1.S1_x_at--785--5991Chr10:12888990..12889014 (25 bp)
GAGACCGCCGCGAGAGCAAAACCTA
LOC_Os10g25550
Os.46687.1.S1_x_at--257--2191Chr10:12888910..12888934 (25 bp)
ACAAAAGCTTGAACGGGCAGTACTC
LOC_Os10g25550
Os.46687.1.S1_x_at--92--4951Chr10:12888763..12888787 (25 bp)
GCATTGTAGAGCCATTTGTGTACAT
LOC_Os10g25550
Os.46687.1.S1_x_at--701--5231Chr10:12888714..12888738 (25 bp)
GAATCAATAATTTGTGTGGAGCATA
LOC_Os10g25550
Os.46687.1.S1_x_at--927--1411Chr10:12888621..12888645 (25 bp)
AGAAATTTCAGCATATCCCTGTATG
LOC_Os10g25550
Os.46687.1.S1_x_at--1125--217Chr11:3982730..3982753 (24 bp)
ATATTGGTGATACACAAACTTGTTA
NONE
Target Sequence 
GAATACATCATGACTGGTCATCTAACGACAAAGAGCGATGTGTATAGCTATGGTGTGGTGCTGCTGGAGCTACTAACCGG
ACGGAAAGCCGTGGATAAGAAGAGACCGCCGCGAGAGCAAAACCTAGTGGAATGGGNTCGGCCATGCNTACATGACTCTN
GCNGGCTCAACCGTGTCATNGACAAAAGCTTGAACGGGCAGTACTCGACTNGAGCCGTACAAAAGGNTGCGGCCATAGNG
TATCAGTGCTTGAGTGTTAGCCCTAAGTCTCGACCCCGGATGTCAGCGGTTGTGGAGGCCCTGGAACCACTTCTGGCCAT
GGATGATGGCATTGTAGAGCCATTTGTGTACATGGCACCACCCGAGAGTAAATAAATGAATCAATAATTTGTGTGGAGCA
TATGTACAAACATNCCATTNTCCAATCCTTGCAATCAATTTAAAATATAGAAAATTCTCCATTTGCATTTAGAAATTTCA
GCATATCCCTGTATGCCTNNGAGTTTTTCTTAAGAGTAAATTATATTGGTGATACACAAACTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46687.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis