Browse Element(s) Details


Os.46688.1.S1_x_at

Description gb:CA766601
DB_XREF= gi:27548694
DB_XREF=AF53-Rpf_12_B15_T7_050.ab1
CLONE=C0004263
TID=Os.46688.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0061I18.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g252209/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25180Os.46294.1.S1_at10/1110+12666644..12669510hypothetical protein
LOC_Os10g25190OsAffx.8166.1.S1_at4/1110+12671153..12671479transposon protein, putative, unclassified
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed
LOC_Os10g25230Os.46849.1.S1_at11/1110+12699796..12700622ZIM motif family protein, expressed
LOC_Os10g25250OsAffx.30526.1.S1_x_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.30526.1.S1_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.17718.1.A1_at3/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.11600.1.S1_at1/1110+12711517..12715593ZIM motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46688.1.S1_x_at--153--9631Chr10:12687662..12687686 (25 bp)
TCAGAATTACCATGGTCGCCAGGGA
LOC_Os10g25220
Os.46688.1.S1_x_at--1013--8151Chr10:12687631..12687655 (25 bp)
GGAAACCAGTACCATGACAGGCAGA
LOC_Os10g25220
Os.46688.1.S1_x_at--414--1471Chr10:12687609..12687633 (25 bp)
AGAATCATAACCAGAATCCCCAGAG
LOC_Os10g25220
Os.46688.1.S1_x_at--422--551Chr10:12687594..12687618 (25 bp)
ATCCCCAGAGGTTTCGACCATGGAA
LOC_Os10g25220
Os.46688.1.S1_x_at--165--5431Chr10:12687572..12687596 (25 bp)
GAAGCCATGCTTCATTTATCAACAA
LOC_Os10g25220
Os.46688.1.S1_x_at--154--9711Chr10:12687554..12687578 (25 bp)
TCAACAACAGGGATGGTGCCCGTAT
LOC_Os10g25220
Os.46688.1.S1_x_at--549--10171NONE
TTTGGGTGAGTAATCCGGTTGGACA
NONE
Os.46688.1.S1_x_at--556--5611NONE
GACAAGCGAGTCAACCCGAGGTAGC
NONE
Os.46688.1.S1_x_at--94--10251Chr10:12687357..12687381 (25 bp)
TTTGGTTTCTCACGCTCTTGTATAA
LOC_Os10g25220
Os.46688.1.S1_x_at--552--4871Chr10:12687332..12687356 (25 bp)
GCTATCCAGCTGATTTATTTGCACA
LOC_Os10g25220
Os.46688.1.S1_x_at--133--2911Chr10:12687259..12687283 (25 bp)
AAGGTTTCTTGCTTTCTTGGCCATG
LOC_Os10g25220
Target Sequence 
TCAGAATTACCATGGTCGCCAGGGAATGAACGGAAACCAGTACCATGACAGGCAGAATCATAACCAGAATCCCCAGAGGT
TTCGACCATGGAAGCCATGCTTCATTTATCAACAACAGGGATGGTGCCCGTATGGGGAAAACTGCAAATTTATGCATGAT
TTGAGGTAGTAAACTTAAGTGCAATACTTTGATGCGATGCTTGACAATTGAGAGGGGAAAAACTATGTCTTTTGGGTGAG
TAATCCGGTTGGACAAGCGAGTCAACCCGAGGTAGCAAGTAAAGCTTCAGAAAGCTACACGTTTTTTTGGTTTCTCACGC
TCTTGTATAAGCTATCCAGCTGATTTATTTGCACAATCATGTGATGATTTGCAAATTTGCATACCGAAGCATGAATACCA
GGCAAGGTTTCTTGCTTTCTTGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46688.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis