Browse Element(s) Details


Os.46753.1.S1_at

Description gb:AK121243.1
DB_XREF= gi:37990866
TID=Os.46753.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.46753 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099B06, full insert sequence.
FL= gb:AK121243.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3886011/11Methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38840OsAffx.19240.1.S1_at11/1111+22602933..22603470hypothetical protein
LOC_Os11g38850OsAffx.19241.1.S1_at11/1111+22618618..22621870Protein kinase domain containing protein
LOC_Os11g38860Os.46753.1.S1_at11/1111+22627166..22631595Methyltransferase, putative, expressed
LOC_Os11g38870Os.27243.1.S1_at11/1111+22631489..22636257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g38880OsAffx.7347.1.S1_at11/1111+22639595..22640956hypothetical protein
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46753.1.S1_at--120--5091Chr11:22630996..22631020 (25 bp)
GCACGGTGATCCTCCGGGACGACAT
LOC_Os11g38860
Os.46753.1.S1_at--865--7631Chr11:22631011..22631035 (25 bp)
GGGACGACATTGAGGTCCTCCTCAA
LOC_Os11g38860
Os.46753.1.S1_at--622--6431Chr11:22631072..22631096 (25 bp)
GATCATGGCGAACCACGAGGACAGC
LOC_Os11g38860
Os.46753.1.S1_at--214--5971Chr11:22631109..22631133 (25 bp)
GAGAAGGTGCTCTACGCCGTCAAGC
LOC_Os11g38860
Os.46753.1.S1_at--356--7651Chr11:22631322..22631346 (25 bp)
GGGAGTTCAATTCTTTTCAGTGTGA
LOC_Os11g38860
Os.46753.1.S1_at--192--3491Chr11:22631357..22631381 (25 bp)
CAGGAGTTGTGTTCTTTCGATTTGA
LOC_Os11g38860
Os.46753.1.S1_at--668--7831Chr11:22631413..22631437 (25 bp)
GGTAGCAGGACTTAGCATTTCCATA
LOC_Os11g38860
Os.46753.1.S1_at--705--5391Chr11:22631445..22631469 (25 bp)
GAAGCATATACTTTGCATGTCTCAT
LOC_Os11g38860
Os.46753.1.S1_at--338--771Chr11:22631461..22631485 (25 bp)
ATGTCTCATGGTTTCAGCTGTGCTT
LOC_Os11g38860
Os.46753.1.S1_at--612--4931Chr11:22631482..22631506 (25 bp)
GCTTGTTGATCATTTCTCATAGCCA
LOC_Os11g38860
Os.46753.1.S1_at--57--4751Chr11:22631555..22631579 (25 bp)
GCTGAAACAAGCTGCCCATGAACAT
LOC_Os11g38860
Target Sequence 
GCACGGTGATCCTCCGGGACGACATTGAGGTCCTCCTCAAGGTTCAGAGGATCGCGAGCGGGATGCGGTGGAAGATGATC
ATGGCGAACCACGAGGACAGCCCCCACATACCGGAGAAGGTGCTCTACGCCGTCAAGCGGTACTGGACCGCCGACGACAA
GAGCTCGGAGCCGGAGCCAGAGCCGGAGAAGATGAAGAAGAAGGCGGGGAGCTNTTCACAAGAGAGGAGCTCCGAGGAGG
AGGAGGAGAGTACAGCAAGTTNTTCAGAAGAGAAGGGTTCAGAGGAGTAAGAGGTGCTGATCATGTGTGATTATTTTCAG
TTGTTGGGGAGTTCAATTCTTTTCAGTGTGATAGGGGAGATCAGGAGTTGTGTTCTTTCGATTTGATGATTGTCTTAGGA
TGAACAATATGATGTTCGGTAGCAGGACTTAGCATTTCCATAGATTCAAGAAGCATATACTTTGCATGTCTCATGGTTTC
AGCTGTGCTTGTTGATCATTTCTCATAGCCATAAACATGCAGTTTGCAACAGATTACAAATATTTNTTCAACTTGTAATG
CTGAAACAAGCTGCCCATGAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis