Browse Element(s) Details


OsAffx.19241.1.S1_at

Description tigr:9639.m03532
TID=OsAffx.19241.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative receptor-like protein kinase 4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3885011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38820Os.46862.1.S1_at8/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38820OsAffx.20329.1.S1_at2/1111+22589479..22595092retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38830NANA11+22595980..22596465hypothetical protein
LOC_Os11g38840OsAffx.19240.1.S1_at11/1111+22602933..22603470hypothetical protein
LOC_Os11g38850OsAffx.19241.1.S1_at11/1111+22618618..22621870Protein kinase domain containing protein
LOC_Os11g38860Os.46753.1.S1_at11/1111+22627166..22631595Methyltransferase, putative, expressed
LOC_Os11g38870Os.27243.1.S1_at11/1111+22631489..22636257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g38880OsAffx.7347.1.S1_at11/1111+22639595..22640956hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0004672molecular_functionprotein kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19241.1.S1_at--973--2111Chr11:22621046..22621070 (25 bp)
ACATGGACTTCTTTATTTGCACAAA
LOC_Os11g38850
OsAffx.19241.1.S1_at--28--9031Chr11:22621063..22621087 (25 bp)
TGCACAAACATTCTCGGCTGCGAGT
LOC_Os11g38850
OsAffx.19241.1.S1_at--37--6911Chr11:22621347..22621371 (25 bp)
GTATGCTTCGGAGGGACTCTTCTCA
LOC_Os11g38850
OsAffx.19241.1.S1_at--1083--3971Chr11:22621395..22621419 (25 bp)
CGGTGTCCTAATTCTCGAGATTGTT
LOC_Os11g38850
OsAffx.19241.1.S1_at--445--8171Chr11:22621430..22621454 (25 bp)
GGAACTCTGGTTTTCATCAATGTGG
LOC_Os11g38850
OsAffx.19241.1.S1_at--600--6051Chr11:22621454..22621478 (25 bp)
GAGATTTCTTCACCCTACTTGGATA
LOC_Os11g38850
OsAffx.19241.1.S1_at--633--8931Chr11:22621696..22621720 (25 bp)
TGACCGGCCCACAATGTCAGATGTG
LOC_Os11g38850
OsAffx.19241.1.S1_at--149--5211Chr11:22621741..22621765 (25 bp)
GAATATGACACTGCCTAAACCCAAC
LOC_Os11g38850
OsAffx.19241.1.S1_at--460--3251Chr11:22621762..22621786 (25 bp)
CAACCATCCAGCATATTTTCACATA
LOC_Os11g38850
OsAffx.19241.1.S1_at--809--8191Chr11:22621798..22621822 (25 bp)
GGAAGAGGCATCCACAGCTCTTGAA
LOC_Os11g38850
OsAffx.19241.1.S1_at--649--1571Chr11:22621813..22621837 (25 bp)
AGCTCTTGAATCTCCCAGTCTTAAT
LOC_Os11g38850
Target Sequence 
ACATGGACTTCTTTATTTGCACAAACATTCTCGGCTGCGAGTCATACATAGAGATCTTAAAGCAAGCAACATTCTCCTAG
ACTGTGAAATGAATCCTAAAATTTCAGACTTTGGGCTTGCGAGAATATTCAGCTCGAATGATAAAGAAGAAAACACAAAA
AGGATTGTCGGGACATATGGTTATATGGCTCCTGAGTATGCTTCGGAGGGACTCTTCTCAATTAAATCTGATGTATTCAG
CTTCGGTGTCCTAATTCTCGAGATTGTTAGTGGGAAAAGGAACTCTGGTTTTCATCAATGTGGAGATTTCTTCACCCTAC
TTGGATATATGATGAGATGCATTAACATTGCATTGCTGTGTGTTCAAGAGAATGCGGCTGACCGGCCCACAATGTCAGAT
GTGGTTGTGATGCTAAGCAGCGAGAATATGACACTGCCTAAACCCAACCATCCAGCATATTTTCACATAAGGGTAACAAA
GGAAGAGGCATCCACAGCTCTTGAATCTCCCAGTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19241.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis