Browse Element(s) Details


Os.46808.2.S1_x_at

Description gb:NM_197029.1
DB_XREF= gi:37535417
TID=Os.46808.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46808 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0093B11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0093B11.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g339508/11hypothetical protein
LOC_Os11g331504/11hypothetical protein
LOC_Os09g152302/11expressed protein
LOC_Os03g529301/11hypothetical protein
LOC_Os01g388701/11hypothetical protein
LOC_Os01g288941/11hypothetical protein
LOC_Os07g124201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33930Os.3107.1.S1_at11/1110+17707155..17711418pleckstrin homology domain-containing protein, putative, expressed
LOC_Os10g33940Os.3105.1.S1_at11/1110+17721100..17727519Auxin response factor 16, putative, expressed
LOC_Os10g33950Os.46808.2.S1_x_at8/1110+17733044..17734149hypothetical protein
LOC_Os10g33952NANA10+17748315..17748492NA
LOC_Os10g33954NANA10+17751297..17751602hypothetical protein
LOC_Os10g33960Os.46312.1.S1_a_at11/1110+17756147..17763107rolled leaf1, putative, expressed
LOC_Os10g33960Os.39943.1.S1_s_at1/1110+17756147..17763107rolled leaf1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46808.2.S1_x_at--1024--2457Chr11:19117051..19117071 (21 bp)
AACAAAGTTGGATACAAGATGGCAT
LOC_Os11g33150
Os.46808.2.S1_x_at--197--1911NONE
ACGGGCTTCACGAGCGGTCTAACCG
NONE
Os.46808.2.S1_x_at--1014--3951NONE
CGGGCTTCACGAGCGGTCTAACCGG
NONE
Os.46808.2.S1_x_at--576--8291NONE
GGCTTCACGAGCGGTCTAACCGGCA
NONE
Os.46808.2.S1_x_at--134--4614Chr08:13726855..13726879 (25 bp)
GCGACTTCGGCGATCAGACCGGAGA
NONE
Os.46808.2.S1_x_at--702--4095Chr08:13726856..13726880 (25 bp)
CGACTTCGGCGATCAGACCGGAGAT
NONE
Os.46808.2.S1_x_at--676--5694Chr08:13726857..13726881 (25 bp)
GACTTCGGCGATCAGACCGGAGATT
NONE
Os.46808.2.S1_x_at--77--2035Chr08:13726858..13726882 (25 bp)
ACTTCGGCGATCAGACCGGAGATTC
NONE
Os.46808.2.S1_x_at--324--9457Chr11:19117748..19117884 (25 bp)
TCGGCGATCAGACCGGAGATTCAAC
LOC_Os11g33150
Os.46808.2.S1_x_at--868--3746Chr12:15613672..15613695 (24 bp)
ATCAGACCGGAGATTCAACACCGGT
NONE
Os.46808.2.S1_x_at--175--46943Chr12:15954437..15954461 (25 bp)
GCGGCATCCACTCGGTCAGACCGGC
NONE
Target Sequence 
AACAAAGTTGGATACAAGATGGCATACGGTGGATGGAAATCGTGTGGGAGAGATCTTTGCAACGGGCTTCACGAGCGGTC
TAACCGGCAACTCACCGGTGGTCAGACCGGCGGCATTGCGGCGGTCAGACCGGCGGGAGCGAGGCGGTCAGACCGGCGGC
GGCGACAGGTGCGGCAGGCGACTTCGGCGATCAGACCGGAGATTCAACACCGGTCAGACCGGCGGCATCCACTCGGTCAG
ACCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46808.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis