Browse Element(s) Details


Os.46849.1.S1_at

Description gb:AK107854.1
DB_XREF= gi:32993063
TID=Os.46849.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0068A07.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-A12, full insert sequence.
FL= gb:AK107854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2523011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25200Os.3343.1.S1_at11/1110+12674765..12682733expressed protein
LOC_Os10g25210Os.46689.1.S1_at11/1110+12684298..12686563F-box protein interaction domain containing protein, expressed
LOC_Os10g25220Os.46688.1.S1_x_at9/1110+12687132..12691819SAP domain containing protein, expressed
LOC_Os10g25230Os.46849.1.S1_at11/1110+12699796..12700622ZIM motif family protein, expressed
LOC_Os10g25250OsAffx.30526.1.S1_x_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.30526.1.S1_at9/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.17718.1.A1_at3/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25250OsAffx.11600.1.S1_at1/1110+12711517..12715593ZIM motif family protein
LOC_Os10g25260OsAffx.25647.1.S1_x_at9/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.1.S1_at8/1110+12720484..12722196hypothetical protein
LOC_Os10g25260OsAffx.25647.2.S1_at3/1110+12720484..12722196hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46849.1.S1_at--266--4711Chr10:12700291..12700315 (25 bp)
GCGGCGCAGATGACCATCTTCTACG
LOC_Os10g25230
Os.46849.1.S1_at--855--9331Chr10:12700011..12700035 (25 bp)
TCGCGCTCGCGCTCTGATCAGTACA
LOC_Os10g25230
Os.46849.1.S1_at--20--411Chr10:12699995..12700019 (25 bp)
ATCAGTACACGTCAGCTTTAATCCC
LOC_Os10g25230
Os.46849.1.S1_at--790--7031Chr10:12699991..12700015 (25 bp)
GTACACGTCAGCTTTAATCCCATAA
LOC_Os10g25230
Os.46849.1.S1_at--234--3031Chr10:12699976..12700000 (25 bp)
AATCCCATAATTAACGAGGCCGTGA
LOC_Os10g25230
Os.46849.1.S1_at--402--9071Chr10:12699942..12699966 (25 bp)
TGCTTGCAGCATTTGTACAGTGCAC
LOC_Os10g25230
Os.46849.1.S1_at--339--7031Chr10:12699928..12699952 (25 bp)
GTACAGTGCACGATTATTCCTATCT
LOC_Os10g25230
Os.46849.1.S1_at--907--5091Chr10:12699921..12699945 (25 bp)
GCACGATTATTCCTATCTGTCACAA
LOC_Os10g25230
Os.46849.1.S1_at--432--91Chr10:12699913..12699937 (25 bp)
ATTCCTATCTGTCACAAGTAGTAGT
LOC_Os10g25230
Os.46849.1.S1_at--944--6931Chr10:12699878..12699902 (25 bp)
GTAGTAGTACATATGCTAGGGATCA
LOC_Os10g25230
Os.46849.1.S1_at--276--7671Chr10:12699860..12699884 (25 bp)
GGGATCATATAATTTCATTGGAAAG
LOC_Os10g25230
Target Sequence 
GCGGCGCAGATGACCATCTTCTACGGCGGGCGGGTGCTGGTGCTCGACGAGTGCCCCGCGGACAGGGCGGCGGCGCTGCT
GCGGCTCGCCGCCTCGTCCAGGGGCGTGCCCCGCGACGATCTCGCCAGCACTGCCGCCGCCGCCGGCGAGTCGGCGGACC
TGCCGGTGGCGAGGAAGGCGTCGCTGCAGCGGTTCATGGAGAAGAGGAAGGGCAGGCTCGCCGCCCGCGGCCAGCCGTAC
CGGCGCCACGACGCCGCGGCGGCGGCGCGCGGCGACCACCTCGCGCTCGCGCTCTGATCAGTACACGTCAGCTTTAATCC
CATAATTAACGAGGCCGTGAGGATGCTTATGCTTGCAGCATTTGTACAGTGCACGATTATTCCTATCTGTCACAAGTAGT
AGTAGTAGTTTTAGTAGTAGTACATATGCTAGGGATCATATAATTTCATTGGAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis