Browse Element(s) Details


Os.46884.1.S1_at

Description gb:AK105216.1
DB_XREF= gi:32990425
TID=Os.46884.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0053C23.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-B04, full insert sequence.
FL= gb:AK105216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3900011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38960OsAffx.30716.1.S1_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38960OsAffx.30716.1.S1_x_at11/1110+20434474..20436498lectin receptor kinase 7, putative
LOC_Os10g38970Os.10203.1.S1_at11/1110+20438807..20447653expressed protein
LOC_Os10g38980Os.26772.1.S1_x_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.3.S1_at11/1110+20449932..20453909expressed protein
LOC_Os10g38980Os.26772.2.S1_at2/1110+20449932..20453909expressed protein
LOC_Os10g39000Os.46884.1.S1_at11/1110+20456755..20458158expressed protein
LOC_Os10g39010Os.10505.1.S1_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S2_a_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39010Os.10505.1.S1_at11/1110+20461335..20465805Protein kinase domain containing protein, expressed
LOC_Os10g39020Os.46486.1.S1_at11/1110+20466642..20469079fringe protein, putative, expressed
LOC_Os10g39030Os.17301.1.S1_at11/1110+20472065..20476769Associated with HOX family protein, expressed
LOC_Os10g39044NANA10+20482695..20484015hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46884.1.S1_at--310--4611Chr10:20457502..20457526 (25 bp)
GCGACGAGGAGAATCCTTCTCAGGT
LOC_Os10g39000
Os.46884.1.S1_at--1103--5951Chr10:20457494..20457518 (25 bp)
GAGAATCCTTCTCAGGTACCTGCGG
LOC_Os10g39000
Os.46884.1.S1_at--1076--9411Chr10:20457485..20457509 (25 bp)
TCTCAGGTACCTGCGGTTCCTCGTG
LOC_Os10g39000
Os.46884.1.S1_at--49--9271Chr10:20457468..20457492 (25 bp)
TCCTCGTGCCGCTGTGCCGGAAGGT
LOC_Os10g39000
Os.46884.1.S1_at--654--3771Chr10:20457421..20457445 (25 bp)
CTCTCGCCGCGGTCGGCCAAGGGTA
LOC_Os10g39000
Os.46884.1.S1_at--753--3931Chr10:20457361..20457385 (25 bp)
CGGCGGTCCACGTCGAGCAGCTACG
LOC_Os10g39000
Os.46884.1.S1_at--757--6411Chr10:20457126..20457150 (25 bp)
GATCTCTCGCAAGAACAGTTCATGT
LOC_Os10g39000
Os.46884.1.S1_at--126--1291Chr10:20457074..20457098 (25 bp)
AGATGAATACTTTGTCACCTCGATT
LOC_Os10g39000
Os.46884.1.S1_at--1047--9671Chr10:20457060..20457084 (25 bp)
TCACCTCGATTCCTGATCTTTTGGG
LOC_Os10g39000
Os.46884.1.S1_at--577--10271Chr10:20457031..20457055 (25 bp)
TTTGACATGTGGTGTATATGCATAC
LOC_Os10g39000
Os.46884.1.S1_at--959--6811Chr10:20456963..20456987 (25 bp)
GTTTAACCTTGTGAAGCTGTTTAAT
LOC_Os10g39000
Target Sequence 
GCGACGAGGAGAATCCTTCTCAGGTACCTGCGGTTCCTCGTGCCGCTGTGCCGGAAGGTGAGGTCGCTCCCGCTGCGCGT
GCTCTCGCCGCGGTCGGCCAAGGGTAGCCTCGCCGCCGCTTCGTCGTCGGCGTCCCCGGCGCGGCGGTCCACGTCGAGCA
GCTACGCCAGCGCGGCGGAGTACTGGTGCCACGGCAATGCCGACACCGCCGTGCGCGACGCCATCCTCTACTGCAAGAAA
TCCATCNNNNNNNNNANNNNNNTGCNANNNACGATCTCTCGCAAGAACAGTTCATGTGAATGTTGGATGATTAATCAGAG
AGAAAGATGAATACTTTGTCACCTCGATTCCTGATCTTTTGGGGGATTTTGACATGTGGTGTATATGCATACAGTAATAT
TACGGTGTATAAGTTGATGAATTGTGCTCCAAGGGGTTTAACCTTGTGAAGCTGTTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis