Browse Element(s) Details


Os.47768.1.S1_at

Description gb:AK059673.1
DB_XREF= gi:32969691
TID=Os.47768.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-G02, full insert sequence.
FL= gb:AK059673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2295011/11Acyl carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein
LOC_Os03g23010Os.12197.1.S1_x_at11/113+13262025..13263348expressed protein
LOC_Os03g23010Os.12197.2.S1_a_at11/113+13262025..13263348expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47768.1.S1_at--219--7071Chr03:13239147..13239171 (25 bp)
GTCAAGGTCGTCAGGAACTTCCAGA
LOC_Os03g22950
Os.47768.1.S1_at--932--2891Chr03:13237481..13237504 (24 bp)
AAGGTCACACCAGATGCACATTTCA
LOC_Os03g22950
Os.47768.1.S1_at--405--5411Chr03:13237370..13237394 (25 bp)
GAAGCTGACAAGATCGACTCCATTA
LOC_Os03g22950
Os.47768.1.S1_at--1012--3431Chr03:13237339..13237363 (25 bp)
CAGTTGATTTCATTGCTTCACACCC
LOC_Os03g22950
Os.47768.1.S1_at--963--10111Chr03:13237269..13237293 (25 bp)
TATGTTTTGTTGTCACGGAGCCTGT
LOC_Os03g22950
Os.47768.1.S1_at--948--1051Chr03:13237241..13237265 (25 bp)
AGGTGGAAGTCATCTGCTGTCCGCA
LOC_Os03g22950
Os.47768.1.S1_at--188--7251Chr03:13237223..13237247 (25 bp)
GTCCGCATGATGTCCACTTTTGCAA
LOC_Os03g22950
Os.47768.1.S1_at--247--51Chr03:13237193..13237217 (25 bp)
ATTGTACCAATGCTACCGTTCTGAA
LOC_Os03g22950
Os.47768.1.S1_at--206--9011Chr03:13237172..13237196 (25 bp)
TGAATATTTTCTTCTGCCTGTGGGT
LOC_Os03g22950
Os.47768.1.S1_at--1130--4471Chr03:13237157..13237181 (25 bp)
GCCTGTGGGTTTTCTGGACCAAATA
LOC_Os03g22950
Os.47768.1.S1_at--288--331Chr03:13237132..13237156 (25 bp)
ATACTTGATTCTGAGGCGGCAGCCC
LOC_Os03g22950
Target Sequence 
GTCAAGGTCGTCAGGAACTTCCAGAAGATCGACGACCCCGCCAAGGTCACACCAGATGCACATTTCAAGAATGATCTTGG
TCTAGACAGTTTGGACGCAGTGGAGGTTGTCATGGCTTTGGAAGAGGAATTTGGTTTTGAGATACCTGACAATGAAGCTG
ACAAGATCGACTCCATTAAAGTTGCAGTTGATTTCATTGCTTCACACCCCCAAGCAAAATGAGCAAATCAATTGTGTTAT
ACTCGTTAATTTTCTATGTTTTGTTGTCACGGAGCCTGTCTAAGGTGGAAGTCATCTGCTGTCCGCATGATGTCCACTTT
TGCAATCAGCATTGTACCAATGCTACCGTTCTGAATATTTTCTTCTGCCTGTGGGTTTTCTGGACCAAATAATACTTGAT
TCTGAGGCGGCAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis