Browse Element(s) Details


Os.57404.1.S1_at

Description gb:AK111467.1
DB_XREF= gi:32996676
TID=Os.57404.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D08, full insert sequence.
FL= gb:AK111467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2299011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22900Os.48420.1.A1_at11/113+13215516..13226730transcriptional activator, putative, expressed
LOC_Os03g22910OsAffx.25197.1.S1_at11/113+13228297..13228654hypothetical protein
LOC_Os03g22919NANA3+13229366..13229698NA
LOC_Os03g22930OsAffx.25198.1.S1_at11/113+13232701..13233234hypothetical protein
LOC_Os03g22940OsAffx.12995.1.S1_at11/113+13235722..13236573expressed protein
LOC_Os03g22950Os.47768.1.S1_at11/113+13237080..13239471Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein
LOC_Os03g23010Os.12197.1.S1_x_at11/113+13262025..13263348expressed protein
LOC_Os03g23010Os.12197.2.S1_a_at11/113+13262025..13263348expressed protein
LOC_Os03g23020Os.49518.1.S1_at11/113+13268172..13270294expressed protein
LOC_Os03g23030OsAffx.12996.1.S1_at10/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23030Os.52128.1.S1_at2/113+13272788..13288554aberrant pollen transmission 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57404.1.S1_at--912--1571Chr03:13253560..13253584 (25 bp)
AGCTCGAGCCGGGACAATGTTCAAA
LOC_Os03g22990
Os.57404.1.S1_at--48--8271Chr03:13253600..13253624 (25 bp)
GGCAGCTATACGGACTACATCTCTA
LOC_Os03g22990
Os.57404.1.S1_at--770--2091Chr03:13253616..13253640 (25 bp)
ACATCTCTAACCAGCTATGGCGGGC
LOC_Os03g22990
Os.57404.1.S1_at--678--8471Chr03:13253633..13253657 (25 bp)
TGGCGGGCTCTCGAACATTTCAGAA
LOC_Os03g22990
Os.57404.1.S1_at--23--5671Chr03:13253688..13253712 (25 bp)
GACATGTGTCCGTTATTCTACGTTT
LOC_Os03g22990
Os.57404.1.S1_at--710--7811Chr03:13253823..13253847 (25 bp)
GGTCTTATTTGTTTTGTGTCCATTA
LOC_Os03g22990
Os.57404.1.S1_at--395--9911Chr03:13253895..13253919 (25 bp)
TACTCCAGGTTGTTGTTCTGCGCTG
LOC_Os03g22990
Os.57404.1.S1_at--521--9491Chr03:13253911..13253935 (25 bp)
TCTGCGCTGCTGTACTACTGTCAGA
LOC_Os03g22990
Os.57404.1.S1_at--705--9651Chr03:13253931..13253955 (25 bp)
TCAGAGAGGTTAGGCTGCGCTCTTT
LOC_Os03g22990
Os.57404.1.S1_at--608--9151Chr03:13253946..13253970 (25 bp)
TGCGCTCTTTTCTTCAATTTGTCTA
LOC_Os03g22990
Os.57404.1.S1_at--827--5272Chr03:13254007..13254031 (25 bp)
GAATGATGCTCTCTTTGAGTCTGCA
LOC_Os03g22990
Target Sequence 
AGCTCGAGCCGGGACAATGTTCAAAATGCTACACCCACAAGGCAGCTATACGGACTACATCTCTAACCAGCTATGGCGGG
CTCTCGAACATTTCAGAATGACCACTCCAAATCATGCTGTCAGAGATCGACATGTGTCCGTTATTCTACGTTTGAGAAAG
GCCGGGGGTCTTCCTGGATAGCAACGCAAGCTGCGAGCTAGCCGGTCCGGGTTCGAGCCTCACCCTCTCCTTAATTCAAA
ATTAATCTAGTCATTCCTAGATTGGTCTTATTTGTTTTGTGTCCATTATTCTAAGTTGAGTTACTTGAAGAAGGCTACTC
CAGGTTGAAGAAGGCTACTCCAGGTTGTTGTTCTGCGCTGCTGTACTACTGTCAGAGAGGTTAGGCTGCGCTCTTTTCTT
CAATTTGTCTAGCTGGTCAAATGATGTATGCTAAGTGAGCGAATTGTGAATGATGCTCTCTTTGAGTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis