Browse Element(s) Details


OsAffx.12996.1.S1_at

Description tigr:9631.m02304
TID=OsAffx.12996.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2303010/11aberrant pollen transmission 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein
LOC_Os03g23010Os.12197.1.S1_x_at11/113+13262025..13263348expressed protein
LOC_Os03g23010Os.12197.2.S1_a_at11/113+13262025..13263348expressed protein
LOC_Os03g23020Os.49518.1.S1_at11/113+13268172..13270294expressed protein
LOC_Os03g23030OsAffx.12996.1.S1_at10/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23030Os.52128.1.S1_at2/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23040OsAffx.12997.1.S1_x_at10/113+13290065..13291728hypothetical protein
LOC_Os03g23040OsAffx.12997.1.S1_at10/113+13290065..13291728hypothetical protein
LOC_Os03g23050Os.53538.1.S1_at11/113+13298761..13305661expressed protein
LOC_Os03g23060Os.46314.2.S1_x_at4/113+13307086..13310937transposon protein, putative, unclassified
LOC_Os03g23060OsAffx.32036.1.S1_at1/113+13307086..13310937transposon protein, putative, unclassified
LOC_Os03g23070Os.23706.1.A1_x_at1/113+13312952..13318372retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009825biological_processmultidimensional cell growth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12996.1.S1_at--730--3771Chr03:13287415..13287439 (25 bp)
CTCTCCATTTGCTCGACAATTGACT
LOC_Os03g23030
OsAffx.12996.1.S1_at--928--2331Chr03:13287451..13287475 (25 bp)
AAAGAAGCTTATACGACGGCACACA
LOC_Os03g23030
OsAffx.12996.1.S1_at--582--10151Chr03:13287460..13287484 (25 bp)
TATACGACGGCACACAAAGAAGATT
LOC_Os03g23030
OsAffx.12996.1.S1_at--370--3031Chr03:13287486..13287509 (24 bp)
AATCCAAAGTTCCTAAAGGTGCAGC
LOC_Os03g23030
OsAffx.12996.1.S1_at--418--6671NONE
GTTCCTAAAGGTGCAGCTACTTCGC
NONE
OsAffx.12996.1.S1_at--980--5051Chr03:13288046..13288069 (24 bp)
GCAGCTACTTCGCAAGAACTCGGGT
LOC_Os03g23030
OsAffx.12996.1.S1_at--546--2751Chr03:13288058..13288082 (25 bp)
AAGAACTCGGGTCAGAGCTGCCACC
LOC_Os03g23030
OsAffx.12996.1.S1_at--599--9431Chr03:13288064..13288088 (25 bp)
TCGGGTCAGAGCTGCCACCTCGTGG
LOC_Os03g23030
OsAffx.12996.1.S1_at--18--9411Chr03:13288083..13288107 (25 bp)
TCGTGGCCCTTCTGGGAACCAGACG
LOC_Os03g23030
OsAffx.12996.1.S1_at--994--3171Chr03:13288187..13288211 (25 bp)
AATTGGCTCTGAGCCTGGTGTCCAT
LOC_Os03g23030
OsAffx.12996.1.S1_at--689--9471Chr03:13288194..13288218 (25 bp)
TCTGAGCCTGGTGTCCATTCCAGCT
LOC_Os03g23030
Target Sequence 
CTCTCCATTTGCTCGACAATTGACTATAACAAAAACAAAGAAGCTTATACGACGGCACACAAAGAAGATTAAATCCAAAG
TTCCTAAAGGTGCAGCTACTTCGCAAGAACTCGGGTCAGAGCTGCCACCTCGTGGCCCTTCTGGGAACCAGACGGACTCC
TCCTCTTCCGATGATAACGATTCATCGCCAACGGAAACGAACCCAAAAGATTAAGCCAGCACCGGCTCAGAACAATTGGC
TCTGAGCCTGGTGTCCATTCCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis