Browse Element(s) Details


OsAffx.12997.1.S1_at

Description tigr:9631.m02305
TID=OsAffx.12997.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2304010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g23020Os.49518.1.S1_at11/113+13268172..13270294expressed protein
LOC_Os03g23030OsAffx.12996.1.S1_at10/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23030Os.52128.1.S1_at2/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23040OsAffx.12997.1.S1_x_at10/113+13290065..13291728hypothetical protein
LOC_Os03g23040OsAffx.12997.1.S1_at10/113+13290065..13291728hypothetical protein
LOC_Os03g23050Os.53538.1.S1_at11/113+13298761..13305661expressed protein
LOC_Os03g23060Os.46314.2.S1_x_at4/113+13307086..13310937transposon protein, putative, unclassified
LOC_Os03g23060OsAffx.32036.1.S1_at1/113+13307086..13310937transposon protein, putative, unclassified
LOC_Os03g23070Os.23706.1.A1_x_at1/113+13312952..13318372retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12997.1.S1_at--759--3491Chr03:13290129..13290153 (25 bp)
CATGGGAATGCGTGTGTACCCGAGT
LOC_Os03g23040
OsAffx.12997.1.S1_at--531--8211Chr03:13290133..13290157 (25 bp)
GGAATGCGTGTGTACCCGAGTCGCC
LOC_Os03g23040
OsAffx.12997.1.S1_at--78--3031Chr03:13290135..13290159 (25 bp)
AATGCGTGTGTACCCGAGTCGCCGC
LOC_Os03g23040
OsAffx.12997.1.S1_at--22--9271Chr03:13290165..13290189 (25 bp)
TCCTCGATCGGCGACGTGGCAGGGA
LOC_Os03g23040
OsAffx.12997.1.S1_at--170--1811NONE
ACCCCTCAATGCTTCAGTTGGCTTG
NONE
OsAffx.12997.1.S1_at--373--4191Chr03:13291625..13291649 (25 bp)
CCCTCAATGCTTCAGTTGGCTTGAA
LOC_Os03g23040
OsAffx.12997.1.S1_at--1070--9711Chr03:13291628..13291652 (25 bp)
TCAATGCTTCAGTTGGCTTGAAAAA
LOC_Os03g23040
OsAffx.12997.1.S1_at--154--9831Chr03:13291665..13291689 (25 bp)
TAAAACGATTGACCAAAACAGCACT
LOC_Os03g23040
OsAffx.12997.1.S1_at--1127--1871Chr03:13291669..13291693 (25 bp)
ACGATTGACCAAAACAGCACTACAG
LOC_Os03g23040
OsAffx.12997.1.S1_at--566--6591Chr03:13291671..13291695 (25 bp)
GATTGACCAAAACAGCACTACAGAA
LOC_Os03g23040
OsAffx.12997.1.S1_at--935--8891Chr03:13291674..13291698 (25 bp)
TGACCAAAACAGCACTACAGAAGAA
LOC_Os03g23040
Target Sequence 
CATGGGAATGCGTGTGTACCCGAGTCGCCGCCGGGTTCCTCGATCGGCGACGTGGCAGGGACGATGGGGTTCTTCGTCGC
CCACCCCTCAATGCTTCAGTTGGCTTGAAAAAGAAAAAGAACCCTAAAACGATTGACCAAAACAGCACTACAGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12997.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis