Browse Element(s) Details


Os.47944.1.S1_a_at

Description gb:AK070492.1
DB_XREF= gi:32980516
TID=Os.47944.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E11.10 (P0439E11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048B11, full insert sequence.
FL= gb:AK070492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6103011/11VHS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g60990NANA1+35616360..35617745retrotransposon protein, putative, unclassified
LOC_Os01g61000NANA1+35618377..35621612transposon protein, putative, unclassified
LOC_Os01g61010Os.20187.1.S1_at11/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61010Os.20187.2.S1_at10/111+35630301..35632588Nodulin-like family protein, expressed
LOC_Os01g61020OsAffx.24045.1.S1_at11/111+35636453..35639614D-mannose binding lectin family protein
LOC_Os01g61030Os.47944.1.S1_a_at11/111+35641322..35645694VHS domain containing protein, expressed
LOC_Os01g61044Os.36162.1.S1_s_at11/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61044Os.36162.1.S1_at10/111+35647689..35654013Transmembrane amino acid transporter protein, expressed
LOC_Os01g61060Os.10716.1.S1_at11/111+35655627..35658056Protein of unknown function, DUF614 containing protein, expressed
LOC_Os01g61070Os.6864.1.S1_at11/111+35659554..35660353heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0005795cellular_componentGolgi stack
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47944.1.S1_a_at--294--4451Chr01:35641788..35641812 (25 bp)
GCCTCATTGCCGATATGGAATGGTT
LOC_Os01g61030
Os.47944.1.S1_a_at--769--4491Chr01:35641780..35641804 (25 bp)
GCCGATATGGAATGGTTCTACTACA
LOC_Os01g61030
Os.47944.1.S1_a_at--150--7891Chr01:35641767..35641791 (25 bp)
GGTTCTACTACAAGTAATGGACTAA
LOC_Os01g61030
Os.47944.1.S1_a_at--316--8131Chr01:35641749..35641773 (25 bp)
GGACTAAGTGCAACACAAGCTCAAA
LOC_Os01g61030
Os.47944.1.S1_a_at--463--371Chr01:35641715..35641739 (25 bp)
ATCAACAACCGCCAGGTTCTTCAGC
LOC_Os01g61030
Os.47944.1.S1_a_at--919--10511Chr01:35641696..35641720 (25 bp)
TTCAGCGGCAGCAAGCAAACCTTAT
LOC_Os01g61030
Os.47944.1.S1_a_at--868--5131Chr01:35641682..35641706 (25 bp)
GCAAACCTTATTACATACCTGACAA
LOC_Os01g61030
Os.47944.1.S1_a_at--941--2051Chr01:35641637..35641661 (25 bp)
ACTTGAAGGGTCTCAGTGGTGGAAA
LOC_Os01g61030
Os.47944.1.S1_a_at--952--9771Chr01:35641612..35641636 (25 bp)
TAAGATGGGCGTACCCACTAGCATG
LOC_Os01g61030
Os.47944.1.S1_a_at--269--6991Chr01:35641602..35641626 (25 bp)
GTACCCACTAGCATGGGTAGTGCAA
LOC_Os01g61030
Os.47944.1.S1_a_at--628--7851Chr01:35641587..35641611 (25 bp)
GGTAGTGCAAATGGTGGTCAACCTA
LOC_Os01g61030
Target Sequence 
GCCTCATTGCCGATATGGAATGGTTCTACTACAAGTAATGGACTAAGTGCAACACAAGCTCAAATGAATGGGAATCAACA
ACCGCCAGGTTCTTCAGCGGCAGCAAGCAAACCTTATTACATACCTGACAATTTATTCAGTGATTTGATTGACTTGAAGG
GTCTCAGTGGTGGAAATAAGATGGGCGTACCCACTAGCATGGGTAGTGCAAATGGTGGTCAACCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47944.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis