Browse Element(s) Details


Os.47947.1.A1_at

Description gb:AK070025.1
DB_XREF= gi:32980049
TID=Os.47947.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039C11, full insert sequence.
FL= gb:AK070025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3739011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed
LOC_Os08g37390Os.47947.1.A1_at11/118+23515166..23518230Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g37400Os.18046.1.S1_at11/118+23530649..23532599ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g37410OsAffx.6058.1.S1_at10/118+23536122..23538314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000080biological_processG1 phase of mitotic cell cycle
GO:0009744biological_processresponse to sucrose stimulus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47947.1.A1_at--367--10051Chr08:23517650..23517674 (25 bp)
TAGATCACTCTCTCTGTAGTCTGTA
LOC_Os08g37390
Os.47947.1.A1_at--867--2151Chr08:23517674..23517698 (25 bp)
ACACCACTCATCTCGACAAAGGCAA
LOC_Os08g37390
Os.47947.1.A1_at--404--31Chr08:23517704..23517728 (25 bp)
ATTGGTTTCGATTGCAACGACTGTT
LOC_Os08g37390
Os.47947.1.A1_at--666--5611Chr08:23517831..23517855 (25 bp)
GACAACACCTAATTGCTAAGCTTTT
LOC_Os08g37390
Os.47947.1.A1_at--370--2711Chr08:23517848..23517872 (25 bp)
AAGCTTTTGCAAGCCAGCAAGCCAT
LOC_Os08g37390
Os.47947.1.A1_at--319--7591Chr08:23518003..23518027 (25 bp)
GGGCTTTAGGCAACAAGTCCAAGAA
LOC_Os08g37390
Os.47947.1.A1_at--856--1131Chr08:23518018..23518042 (25 bp)
AGTCCAAGAACTAGGCATGCACTGA
LOC_Os08g37390
Os.47947.1.A1_at--953--651Chr08:23518034..23518058 (25 bp)
ATGCACTGACCTGGCTGTGTAGTAT
LOC_Os08g37390
Os.47947.1.A1_at--880--6871Chr08:23518055..23518079 (25 bp)
GTATTCTTTTGTTCACTAGCTCTAG
LOC_Os08g37390
Os.47947.1.A1_at--572--2031Chr08:23518069..23518093 (25 bp)
ACTAGCTCTAGTTGCATTAGTTGCA
LOC_Os08g37390
Os.47947.1.A1_at--116--1511Chr08:23518145..23518169 (25 bp)
AGCACTCCTTTTTGTGATCAGCAAT
LOC_Os08g37390
Target Sequence 
TAGATCACTCTCTCTGTAGTCTGTACACCACTCATCTCGACAAAGGCAAAGTCAATTGGTTTCGATTGCAACGACTGTTA
GAAAGAAAGAACACTGGAAGGGGGCCAAAAGGGAGGGAATTTTGACATGACGAGAGAGAGCTAGCTAGCAAGAAGTTGCT
GATGAATAAAGAGGTGAGGTTGACAACACCTAATTGCTAAGCTTTTGCAAGCCAGCAAGCCATGGTGATGAGAGGTGCCC
CCAAAGAACAAAGAAAAGCTTTGTAGCAACATAAAAGCTTGATGAGTTTCAAAAAAAAAAGAAGAAANAAAACATAAAAG
CTNCATGAGATGATCAAGACAAAGGATGGTGAGGGGCTTTAGGCAACAAGTCCAAGAACTAGGCATGCACTGACCTGGCT
GTGTAGTATTCTTTTGTTCACTAGCTCTAGTTGCATTAGTTGCAGTATTGTTTTCTTTTTTCCATTTCATTTGTAAGGAG
AAAATTAGAGGCGGCAGCACTCCTTTTTGTGATCAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47947.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis