Browse Element(s) Details


Os.23365.1.S1_at

Description gb:AK107494.1
DB_XREF= gi:32992703
TID=Os.23365.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23365 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-D06, full insert sequence.
FL= gb:AK107494.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3738011/11Glucose-6-phosphate isomerase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein
LOC_Os08g37370OsAffx.6057.1.S1_s_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37370Os.7930.1.S1_x_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed
LOC_Os08g37390Os.47947.1.A1_at11/118+23515166..23518230Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005982biological_processstarch metabolism
GO:0006094biological_processgluconeogenesis
GO:0006096biological_processglycolysis
GO:0009911biological_processpositive regulation of flower development
GO:0009536cellular_componentplastid
GO:0004347molecular_functionglucose-6-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23365.1.S1_at--718--2371Chr08:23491799..23491823 (25 bp)
AAACCCTAGAGCTGTTGGAGCACTT
LOC_Os08g37380
Os.23365.1.S1_at--591--8071Chr08:23491783..23491807 (25 bp)
GGAGCACTTGTTGCACTCTATGAGC
LOC_Os08g37380
Os.23365.1.S1_at--849--4731Chr08:23491756..23491780 (25 bp)
GCTGTCGGTCTTTATGCTTATTTAA
LOC_Os08g37380
Os.23365.1.S1_at--492--4451Chr08:23491629..23491744 (25 bp)
GCCTATCATCAACCTGGTGTCGAAG
LOC_Os08g37380
Os.23365.1.S1_at--717--991Chr08:23491563..23491587 (25 bp)
AGGATCCTACTTGTTCTTAACGAAG
LOC_Os08g37380
Os.23365.1.S1_at--371--9011Chr08:23490911..23490935 (25 bp)
TGCAAGGACCCTGCTGAGCCATTGA
LOC_Os08g37380
Os.23365.1.S1_at--717--3431Chr08:23490871..23490895 (25 bp)
CAGATCGCTGCCACTGTCCTGAAGA
LOC_Os08g37380
Os.23365.1.S1_at--58--3411Chr08:23490698..23490722 (25 bp)
CAGAAGGCAACTGCGGGTCACCAAG
LOC_Os08g37380
Os.23365.1.S1_at--361--2531Chr08:23490521..23490545 (25 bp)
AACTATAGGTCTACTCTCTTGTATA
LOC_Os08g37380
Os.23365.1.S1_at--882--3111Chr08:23490497..23490521 (25 bp)
AATATTTTTCCTAGCTCTACTCCAT
LOC_Os08g37380
Os.23365.1.S1_at--1057--4811Chr08:23490484..23490508 (25 bp)
GCTCTACTCCATTTGTGATAGCAGG
LOC_Os08g37380
Target Sequence 
AAACCCTAGAGCTGTTGGAGCACTTGTTGCACTCTATGAGCGTGCTGTCGGTCTTTATGCTTATTTAATCAACATCAATG
CCTATCATCAACCTGGTGTCGAAGCAGGGAAAAAGGCTGCTGGAGAGGTGTTGGCACTTCAGAAAAGGATCCTACTTGTT
CTTAACGAAGCCAGCTGCAAGGACCCTGCTGAGCCATTGACACTGGATCAAATTGCAGATCGCTGCCACTGTCCTGAAGA
GATCGAAATGATATACAAAATAATCCAACACATGGCTGCAAACGATAGAGCTCTTATTGCAGAAGGCAACTGCGGGTCAC
CAAGAAGCATCAAGGTCTACCTTGGAGAATGCAACGTGGATGATGATATGAATTCTTAATTTCATCATCGTTTTCTTTTC
ACCTTTTTGGTGAACTTGAGTGATCTTTTTGAACTATAAGGGAAAATGATGCTACTTGCTGATGTGTATTCCTACAAACT
ATAGGTCTACTCTCTTGTATAATATTTTTCCTAGCTCTACTCCATTTGTGATAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis