Browse Element(s) Details


Os.11306.1.S1_at

Description gb:AK099704.1
DB_XREF= gi:32984913
TID=Os.11306.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013075H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075H22, full insert sequence.
FL= gb:AK099704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3735011/11Ubiquitin carboxyl-terminal hydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein
LOC_Os08g37370OsAffx.6057.1.S1_s_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37370Os.7930.1.S1_x_at11/118+23480252..23481735Mitochondrial carrier protein, expressed
LOC_Os08g37380Os.23365.1.S1_at11/118+23490237..23495714Glucose-6-phosphate isomerase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004197molecular_functioncysteine-type endopeptidase activity
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004843molecular_functionubiquitin-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11306.1.S1_at--671--8131Chr08:23461415..23461439 (25 bp)
GGACATGGACCATATTCGCCAGCAG
LOC_Os08g37350
Os.11306.1.S1_at--511--4411Chr08:23461398..23461422 (25 bp)
GCCAGCAGAATCTCCTAGTCCAAGT
LOC_Os08g37350
Os.11306.1.S1_at--94--6751Chr08:23461369..23461393 (25 bp)
GTTCATCAATTTTCACCAGTTCCGA
LOC_Os08g37350
Os.11306.1.S1_at--233--1051Chr08:23461341..23461365 (25 bp)
AGGGTCACATAGCACCGACAGCAGT
LOC_Os08g37350
Os.11306.1.S1_at--311--8171Chr08:23461284..23461308 (25 bp)
GGAACGCCTCATATTTGGTGATCAA
LOC_Os08g37350
Os.11306.1.S1_at--745--2031Chr08:23461252..23461276 (25 bp)
ACTTTGATGGCTCTATGTTCGGACA
LOC_Os08g37350
Os.11306.1.S1_at--589--4471Chr08:23461216..23461240 (25 bp)
GCCGTATGACTTATTCCCGATCAAA
LOC_Os08g37350
Os.11306.1.S1_at--30--3611Chr08:23461185..23461209 (25 bp)
CTTGGGTACCAGTTCATCGGGTCAA
LOC_Os08g37350
Os.11306.1.S1_at--284--7571Chr08:23461098..23461122 (25 bp)
GGGCGATGAAAGTTCTTCCTTGTAT
LOC_Os08g37350
Os.11306.1.S1_at--602--8111Chr08:23460949..23460973 (25 bp)
GGACGGCCCAAACATTTTATTGACA
LOC_Os08g37350
Os.11306.1.S1_at--1063--7991Chr08:23460888..23460912 (25 bp)
GGATGTATTATTACCCCACTGCAAT
LOC_Os08g37350
Target Sequence 
GGACATGGACCATATTCGCCAGCAGAATCTCCTAGTCCAAGTGAGAGTTCATCAATTTTCACCAGTTCCGACACAGGGTC
ACATAGCACCGACAGCAGTGAAAGCACTAGAAACTCTACCAGTGAGGATATGGAACGCCTCATATTTGGTGATCAAGTTT
CATACTTTGATGGCTCTATGTTCGGACATGGGGAAAACGGCCGTATGACTTATTCCCGATCAAAGTCTAGCTTGGGTACC
AGTTCATCGGGTCAAGAGGTGGATCAGTATAGGCCTGACGAGCACAGGCTTCAGGGTGCCAGGGAGGGTTGGAATCAGGG
CGATGAAAGTTCTTCCTTGTATACTAACCAAAGTAAACATCAATTTAGTAGTAAGTTAACAGAACAATATAGGAGGAGGT
TAGATGGGACTGAGCATGATCCTGGAGAAGCCAATAGTGTTTTATTGAGGAGATCGGCTAGGGAAAGGACGGCCCAAACA
TTTTATTGACATGTGGAGGGTTTGGGTTGTAGAGGTATAATAATGTAGGATGTATTATTACCCCACTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis