Browse Element(s) Details


Os.10781.1.S1_at

Description gb:AK068050.1
DB_XREF= gi:32978068
TID=Os.10781.1
CNT=50
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.10781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPG010
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131P20, full insert sequence.
FL= gb:AK068050.1 gb:AB110175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3732010/11ATP synthase D chain, mitochondrial, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37350Os.11306.1.S1_at11/118+23460857..23468289Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g37360OsAffx.17377.1.S1_at11/118+23471844..23472276hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10781.1.S1_at--261--2011NONE
AAGCATTGAAATCCCCAAGTACGTT
NONE
Os.10781.1.S1_at--877--2831Chr08:23447247..23447271 (25 bp)
AAGTACGTTGACACCGTGACTCCTC
LOC_Os08g37320
Os.10781.1.S1_at--574--7371Chr08:23447232..23447256 (25 bp)
GTGACTCCTCAGTACAAGCCAAAGT
LOC_Os08g37320
Os.10781.1.S1_at--604--2831Chr08:23447057..23447235 (25 bp)
AAGTTTGATGCGCTGCTTGTTGAGC
LOC_Os08g37320
Os.10781.1.S1_at--777--311Chr08:23446803..23446827 (25 bp)
ATACTTTGCAAAGCATCCTGAGGTC
LOC_Os08g37320
Os.10781.1.S1_at--917--151Chr08:23446686..23446710 (25 bp)
ATTTTGTCTTGTGTCCCAGAGTGTA
LOC_Os08g37320
Os.10781.1.S1_at--740--7611Chr08:23446654..23446678 (25 bp)
GGGAATCCACTATCGCAACAATGGT
LOC_Os08g37320
Os.10781.1.S1_at--359--2391Chr08:23446598..23446622 (25 bp)
AAACTCCCAAACTGATTCTACCATG
LOC_Os08g37320
Os.10781.1.S1_at--465--8831Chr08:23446586..23446610 (25 bp)
TGATTCTACCATGTCGTCCGTGCTG
LOC_Os08g37320
Os.10781.1.S1_at--886--5031Chr08:23446562..23446586 (25 bp)
GCAGTTCCAACTGAATTTGCTTGTG
LOC_Os08g37320
Os.10781.1.S1_at--633--7411Chr08:23446540..23446564 (25 bp)
GTGTTGGACCTCTTCATTTTCTAGA
LOC_Os08g37320
Target Sequence 
AAGCATTGAAATCCCCAAGTACGTTGACACCGTGACTCCTCAGTACAAGCCAAAGTTTGATGCGCTGCTTGTTGAGCTGA
AAGAAGCAGAAAAGGAGTCTCTGAAGGAGTCAGAGAGGATAGAGAAGGAGCTTGCTGAATTGCAGGAGATGAAGAAAAAT
ATCAGCACAATGACAGCAGATGAATACTTTGCAAAGCATCCTGAGGTCAAGCAGAAGTTCGATGATGAAATCCGTAACGA
CAACTGGGGCTACTGAAGAGTGGAGGAACTCNTTNTTTCCCTTTCTTGGAAGAGTTAATAATTTTGTCTTGTGTCCCAGA
GTGTATGTATAGGGGAATCCACTATCGCAACAATGGTGGTTTCCATACCATGTGGATGGGGCCTGTTTAAACTCCCAAAC
TGATTCTACCATGTCGTCCGTGCTGCAGTTCCAACTGAATTTGCTTGTGTTGGACCTCTTCATTTTCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis