Browse Element(s) Details


Os.49431.1.S1_at

Description gb:AK069216.1
DB_XREF= gi:32979240
TID=Os.49431.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023011K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011K15, full insert sequence.
FL= gb:AK069216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3726011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37230Os.5139.2.S1_x_at2/118+23402279..23403127hypothetical protein
LOC_Os08g37230Os.5139.2.S1_at1/118+23402279..23403127hypothetical protein
LOC_Os08g37240NANA8+23407040..23407684transposon protein, putative, unclassified
LOC_Os08g37250OsAffx.17374.1.S1_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37250Os.8648.1.S1_s_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49431.1.S1_at--268--7891Chr08:23419256..23419280 (25 bp)
GGTTCGACCTTAAACTCAGATTGCT
LOC_Os08g37260
Os.49431.1.S1_at--1025--3431Chr08:23419240..23419264 (25 bp)
CAGATTGCTATTTTCAATGCCAGAT
LOC_Os08g37260
Os.49431.1.S1_at--388--6091Chr08:23419206..23419230 (25 bp)
GAGTCCCTCAAAGATTTTTGCTCAT
LOC_Os08g37260
Os.49431.1.S1_at--970--10271Chr08:23419190..23419214 (25 bp)
TTTGCTCATCTATGCTGTCAGTCTT
LOC_Os08g37260
Os.49431.1.S1_at--985--7111Chr08:23419174..23419198 (25 bp)
GTCAGTCTTCCATACTTACTGGCTA
LOC_Os08g37260
Os.49431.1.S1_at--175--1951Chr08:23419157..23419181 (25 bp)
ACTGGCTACTTGTAACACAGGTATC
LOC_Os08g37260
Os.49431.1.S1_at--530--3311Chr08:23419142..23419166 (25 bp)
CACAGGTATCTTGTCTAACAGGTTG
LOC_Os08g37260
Os.49431.1.S1_at--520--151Chr08:23419114..23419138 (25 bp)
ATTAGTTGTGCCGTGGTTGTTGTAC
LOC_Os08g37260
Os.49431.1.S1_at--866--7911Chr08:23419100..23419124 (25 bp)
GGTTGTTGTACTGTCTGTTTTCTAA
LOC_Os08g37260
Os.49431.1.S1_at--917--6271Chr08:23419046..23419070 (25 bp)
GATGATGTACTATAATGTGCCTACT
LOC_Os08g37260
Os.49431.1.S1_at--113--7291Chr08:23419030..23419054 (25 bp)
GTGCCTACTGAACTGAATTTGTCTT
LOC_Os08g37260
Target Sequence 
GGTTCGACCTTAAACTCAGATTGCTATTTTCAATGCCAGATGAAAAGCATGAGTCCCTCAAAGATTTTTGCTCATCTATG
CTGTCAGTCTTCCATACTTACTGGCTACTTGTAACACAGGTATCTTGTCTAACAGGTTGATTATTAGTTGTGCCGTGGTT
GTTGTACTGTCTGTTTTCTAATTCTTTTTCCTTGTATGTATTCATAAAATGATGATGTACTATAATGTGCCTACTGAACT
GAATTTGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis