Browse Element(s) Details


Os.8648.1.S1_s_at

Description gb:AU033142
DB_XREF= gi:3769115
DB_XREF=AU033142
CLONE=S4036_6Z
TID=Os.8648.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.8648 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3725011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37230Os.5139.2.S1_x_at2/118+23402279..23403127hypothetical protein
LOC_Os08g37230Os.5139.2.S1_at1/118+23402279..23403127hypothetical protein
LOC_Os08g37240NANA8+23407040..23407684transposon protein, putative, unclassified
LOC_Os08g37250OsAffx.17374.1.S1_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37250Os.8648.1.S1_s_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8648.1.S1_s_at--136--6711Chr08:23412949..23412973 (25 bp)
GTTCGCAAAGCAGCTCTCCGACGAG
LOC_Os08g37250
Os.8648.1.S1_s_at--576--4551Chr08:23412916..23412940 (25 bp)
GCGCCAAAACGAGCCCTCAAATTAA
LOC_Os08g37250
Os.8648.1.S1_s_at--124--6531Chr08:23412858..23412882 (25 bp)
GATTTTACTGTTCTGCTAGGCCGTA
LOC_Os08g37250
Os.8648.1.S1_s_at--1114--9471Chr08:23412847..23412871 (25 bp)
TCTGCTAGGCCGTAAAATCTCTTTA
LOC_Os08g37250
Os.8648.1.S1_s_at--394--2451Chr08:23412818..23412842 (25 bp)
AAAATCTCGGTTATGTGTGATGGTC
LOC_Os08g37250
Os.8648.1.S1_s_at--457--791Chr08:23412806..23412830 (25 bp)
ATGTGTGATGGTCGAACTGCTTCTG
LOC_Os08g37250
Os.8648.1.S1_s_at--592--6251Chr08:23412800..23412824 (25 bp)
GATGGTCGAACTGCTTCTGATTGAA
LOC_Os08g37250
Os.8648.1.S1_s_at--475--5471Chr08:23412793..23412817 (25 bp)
GAACTGCTTCTGATTGAATCGAATT
LOC_Os08g37250
Os.8648.1.S1_s_at--679--7711Chr08:23412748..23412772 (25 bp)
GGGTGGTTTGTTACTTTGAAACATG
LOC_Os08g37250
Os.8648.1.S1_s_at--270--3672Chr08:23815730..23815846 (24 bp)
CTTTGAAACATGTTCCTCGTTCCAT
NONE
Os.8648.1.S1_s_at--629--3511Chr08:23412727..23412751 (25 bp)
CATGTTCCTCGTTCCATTTTTGTAT
LOC_Os08g37250
Target Sequence 
GTTCGCAAAGCAGCTCTCCGACGAGCGGCGCCGGCGCCAAAACGAGCCCTCAAATTAAATTGAATTAAGGAGTGATAAAA
AAAATTAAAGTGATTTTACTGTTCTGCTAGGCCGTAAAATCTCTTTAAATTAAAATCTCGGTTATGTGTGATGGTCGAAC
TGCTTCTGATTGAATCGAATTGGTCTTCATGTGTGTGTTGGGGGTGGTTTGTTACTTTGAAACATGTTCCTCGTTCCATT
TTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8648.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis