Browse Element(s) Details


OsAffx.17374.1.S1_at

Description tigr:9636.m03740
TID=OsAffx.17374.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=patatin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3725011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37230Os.5139.2.S1_x_at2/118+23402279..23403127hypothetical protein
LOC_Os08g37230Os.5139.2.S1_at1/118+23402279..23403127hypothetical protein
LOC_Os08g37240NANA8+23407040..23407684transposon protein, putative, unclassified
LOC_Os08g37250OsAffx.17374.1.S1_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37250Os.8648.1.S1_s_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17374.1.S1_at--250--7611Chr08:23413715..23413739 (25 bp)
GGGAATCTTCAACTGGCTCATCAAG
LOC_Os08g37250
OsAffx.17374.1.S1_at--937--8311Chr08:23413701..23413725 (25 bp)
GGCTCATCAAGGGTAGCTCAGCTCC
LOC_Os08g37250
OsAffx.17374.1.S1_at--47--1591Chr08:23413682..23413706 (25 bp)
AGCTCCCATCATCGACATGTTTACT
LOC_Os08g37250
OsAffx.17374.1.S1_at--89--751Chr08:23413666..23413690 (25 bp)
ATGTTTACTTCTGCTAGTGCTGACA
LOC_Os08g37250
OsAffx.17374.1.S1_at--925--8951Chr08:23413646..23413670 (25 bp)
TGACATGGTTGACATCCACCTCGGT
LOC_Os08g37250
OsAffx.17374.1.S1_at--662--9551Chr08:23413617..23413641 (25 bp)
TCTTCAGCGCTCTTCAATGCGAAAA
LOC_Os08g37250
OsAffx.17374.1.S1_at--1011--7571Chr08:23413102..23413126 (25 bp)
GGGCTCGATCGACGACTGCTCCAAG
LOC_Os08g37250
OsAffx.17374.1.S1_at--677--1431Chr08:23413031..23413055 (25 bp)
AGAACGTCTCACGAGTAGACCTGGA
LOC_Os08g37250
OsAffx.17374.1.S1_at--1149--10011Chr08:23413016..23413040 (25 bp)
TAGACCTGGAGACCGGCCATTACGT
LOC_Os08g37250
OsAffx.17374.1.S1_at--336--4331Chr08:23413000..23413024 (25 bp)
CCATTACGTGGATGTGGCCGGCGAA
LOC_Os08g37250
OsAffx.17374.1.S1_at--1043--4451Chr08:23412984..23413008 (25 bp)
GCCGGCGAAGGCACGAACAGAGATC
LOC_Os08g37250
Target Sequence 
GGGAATCTTCAACTGGCTCATCAAGGGTAGCTCAGCTCCCATCATCGACATGTTTACTTCTGCTAGTGCTGACATGGTTG
ACATCCACCTCGGTGTGCTCTTCAGCGCTCTTCAATGCGAAAAGAACTACTTACGCATACAGTATGATCAGTTGACGGGC
AGTGCGGGCTCGATCGACGACTGCTCCAAGGAAAACATGGATAACCTGGTGAAGATTGGGGAAATGCTTCTCGACAAGAA
CGTCTCACGAGTAGACCTGGAGACCGGCCATTACGTGGATGTGGCCGGCGAAGGCACGAACAGAGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17374.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis