Browse Element(s) Details


Os.10222.1.S1_s_at

Description gb:AK066304.1
DB_XREF= gi:32976322
TID=Os.10222.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060B01, full insert sequence.
FL= gb:AK066304.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3728011/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37240NANA8+23407040..23407684transposon protein, putative, unclassified
LOC_Os08g37250OsAffx.17374.1.S1_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37250Os.8648.1.S1_s_at11/118+23412692..23415784Patatin-like phospholipase family protein, expressed
LOC_Os08g37260Os.49431.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37260OsAffx.29570.1.S1_at11/118+23419022..23423503expressed protein
LOC_Os08g37270OsAffx.17375.1.S1_at11/118+23424713..23425903DnaJ domain containing protein
LOC_Os08g37280Os.10222.1.S1_s_at11/118+23428999..23433541PWWP domain containing protein, expressed
LOC_Os08g37290NANA8+23439736..23440545Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g37300Os.8621.1.S1_a_at11/118+23442724..23443461expressed protein
LOC_Os08g37310Os.21835.1.S1_at11/118+23443879..23446245Uncharacterized protein family UPF0029 containing protein, expressed
LOC_Os08g37320Os.10781.1.S1_at10/118+23446411..23449336ATP synthase D chain, mitochondrial, putative, expressed
LOC_Os08g37329NANA8+23451107..23451539NA
LOC_Os08g37340OsAffx.6056.1.S1_at11/118+23454181..23454528hypothetical protein
LOC_Os08g37340OsAffx.6056.1.S1_x_at11/118+23454181..23454528hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10222.1.S1_s_at--999--8131Chr08:23432947..23432971 (25 bp)
GGACACCTCAGAAACCATGAATCAT
LOC_Os08g37280
Os.10222.1.S1_s_at--1067--6771Chr08:23433130..23433154 (25 bp)
GTTAGCGCGCGTCAAATCAGGATCA
LOC_Os08g37280
Os.10222.1.S1_s_at--1--7971Chr08:23433149..23433173 (25 bp)
GGATCATGCAGAGTCTTGCTTTGAT
LOC_Os08g37280
Os.10222.1.S1_s_at--240--10711Chr08:23433164..23433188 (25 bp)
TTGCTTTGATTGCTCCGTCAGGATC
LOC_Os08g37280
Os.10222.1.S1_s_at--85--9631Chr08:23433181..23433205 (25 bp)
TCAGGATCCCCGTTTGGCAAAAATG
LOC_Os08g37280
Os.10222.1.S1_s_at--1107--651Chr08:23433295..23433319 (25 bp)
ATGAACTCAGCTTCGGTTACACCTA
LOC_Os08g37280
Os.10222.1.S1_s_at--64--6771Chr08:23433310..23433334 (25 bp)
GTTACACCTAACCAGTTGCTCGCTT
LOC_Os08g37280
Os.10222.1.S1_s_at--259--8051Chr08:23433344..23433368 (25 bp)
GGAGAAACCCACAACGCTACATGGT
LOC_Os08g37280
Os.10222.1.S1_s_at--769--3191Chr08:23433380..23433404 (25 bp)
CAATGCGATTGCCTTTATGTGTAGT
LOC_Os08g37280
Os.10222.1.S1_s_at--390--8711Chr08:23433449..23433473 (25 bp)
TGTAAGGCCACAAAATGGTCCCAGT
LOC_Os08g37280
Os.10222.1.S1_s_at--702--791Chr08:23433463..23433487 (25 bp)
ATGGTCCCAGTATACTGCCAACTGA
LOC_Os08g37280
Target Sequence 
GGACACCTCAGAAACCATGAATCATGACAACAGTCCCNAACTCTTTGANAGGGCCTTTCGATAGTACTNNNNNGGATGCA
GCCATGGAGGAACTGGGGCAAGTTAGCGCGCGTCAAATCAGGATCATGCAGAGTCTTGCTTTGATTGCTCCGTCAGGATC
CCCGTTTGGCAAAAATGGACTGGTTGCATCAACCAGTTTATAATTCTGAGTTAATTCGAATATCCTTGAAAGGTATTCGA
CAGATATTCGAAAGCTATCATAACTCATGAACTCAGCTTCGGTTACACCTAACCAGTTGCTCGCTTAGGTCTTTTGGAGA
AACCCACAACGCTACATGGTCTTNTAGAATGCAATGCGATTGCCTTTATGTGTAGTAGAATCGACTGAATTTAATTGCAA
TGTGAGCACAACATTGTATCTGTAAGGCCACAAAATGGTCCCAGTATACTGCCAACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10222.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis