Browse Element(s) Details


Os.47999.2.A1_x_at

Description gb:NM_192382.1
DB_XREF= gi:34911847
GEN=OJ1159_D09.32
TID=Os.47999.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1159_D09.32 (OJ1159_D09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1159_D09.32 (OJ1159_D09.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g114543/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g176103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g268602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g426502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g447102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g032502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g289502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g201292/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g051202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g267602/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g339102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g210592/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g085402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g224102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g097102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g073301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g269001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g266201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g139701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g204601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g120201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g391901/11retrotransposon, putative, centromere-specific
LOC_Os04g053401/11retrotransposon protein, putative, unclassified
LOC_Os05g151101/11hypothetical protein
LOC_Os04g053301/11Protein kinase domain containing protein
LOC_Os07g456101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g098141/11F-box domain containing protein, expressed
LOC_Os04g553101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g211241/11retrotransposon protein, putative, unclassified
LOC_Os05g199001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g236201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g253501/11transposon protein, putative, unclassified
LOC_Os04g381291/11transposon protein, putative, unclassified
LOC_Os01g588201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11384Os.14491.2.S1_x_at2/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11384Os.47463.1.S1_x_at1/1110+6073493..6078421transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11400NANA10+6084040..6088260retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11420NANA10+6090406..6092146retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11430NANA10+6092629..6097128retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11454Os.45173.1.S1_x_at6/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.2.A1_x_at3/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.20691.1.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454OsAffx.28520.1.S1_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11454Os.47999.3.A1_x_at1/1110+6100800..6114756transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11480OsAffx.20646.1.S1_at11/1110+6126694..6127385hypothetical protein
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47999.2.A1_x_at--379--3771Chr01:26662590..26662613 (24 bp)
CTCTCTCTCTCAGCCGCTGTCAGGA
NONE
Os.47999.2.A1_x_at--741--37719Chr12:20212018..20212042 (25 bp)
CTCTCGTCGTCGGAAGAGCTCTAGC
NONE
Os.47999.2.A1_x_at--794--81995Chr12:9144103..9144124 (22 bp)
GGAAGAGCTCTAGCGCCGTGTGCCC
NONE
Os.47999.2.A1_x_at--193--159158Chr12:8934382..8934405 (24 bp)
AGCTCTAGCGCCGTGTGCCCTAGCT
NONE
Os.47999.2.A1_x_at--22--94328Chr12:20212133..20212157 (25 bp)
TCGGGTTCGCAAGGTCGTCGCCGTC
NONE
Os.47999.2.A1_x_at--115--8057Chr12:20212182..20212206 (25 bp)
GGAGACCGCCGGAGCTTCATCGCCG
NONE
Os.47999.2.A1_x_at--880--34910Chr12:20212199..20212223 (25 bp)
CATCGCCGTCGTCAACCCGAAGGTT
NONE
Os.47999.2.A1_x_at--804--66711Chr12:20212257..20212281 (25 bp)
GTTGCTTCTCCGCCGCTTCTTTGGT
NONE
Os.47999.2.A1_x_at--771--3631NONE
CTTCTTTGGTCACCGCTTGTCGTTT
NONE
Os.47999.2.A1_x_at--112--10251Chr12:9681761..9682267 (25 bp)
TTTGGTCACCGCTTGTCGTTTCCGT
NONE
Os.47999.2.A1_x_at--8--291159Chr12:2064125..2064149 (25 bp)
AAGGTTCGCGAGTGCGCCGGAAGTA
NONE
Target Sequence 
CTCTCTCTCTCAGCCGCTGTCAGGACCCCCGAGCTCTCCTCTACCCGTCGCCACCCTCGCCTTCGCCTCTCGTCGTCGGA
AGAGCTCTAGCGCCGTGTGCCCTAGCTTCGCCGTCGCCGCCGCCGCTCCAGCCGTGCGCCGCCGTCGTTTCAGCCGTCGC
CGTCGCTCGGGAAGACCGCCGTCGGGTTCGCAAGGTCGTCGCCGTCCTCGTCCGCCCCTTCGCCGTCGCCGGAGACCGCC
GGAGCTTCATCGCCGTCGTCAACCCGAAGGTTTCCGCCGCTTCCTCCTCGTCGCCGTCGCCGTCCGTTGCTTCTCCGCCG
CTTCTTTGGTCACCGCTTGTCGTTTCCGTCGTTGCGAAGGTTCGCGAGTGCGCCGGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47999.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis