Browse Element(s) Details


Os.47999.3.A1_at

Description gb:NM_195318.1
DB_XREF= gi:37531995
TID=Os.47999.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1159_D09.32 (OJ1159_D09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g447106/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g063105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g069905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g289801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44680Os.52661.1.S1_at9/1111+26508551..26514533expressed protein
LOC_Os11g44690OsAffx.31477.1.S1_at11/1111+26517623..26520782Protein kinase domain containing protein, expressed
LOC_Os11g44700OsAffx.7414.1.S1_at9/1111+26523038..26527248expressed protein
LOC_Os11g44710Os.47999.3.A1_at6/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.3.A1_x_at5/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.45173.1.S1_x_at3/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.2.A1_x_at2/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710OsAffx.20733.1.A1_x_at1/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44720Os.27691.1.S1_x_at1/1111+26550340..26555423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44730NANA11+26557577..26564307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44740NANA11+26566497..26568124retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47999.3.A1_at--805--6674Chr04:4088391..4088415 (25 bp)
GTTGCTTCTCCGTCGCTCTTTTGGT
NONE
Os.47999.3.A1_at--586--10714Chr04:4088392..4088416 (25 bp)
TTGCTTCTCCGTCGCTCTTTTGGTC
NONE
Os.47999.3.A1_at--20--4914Chr04:4088394..4088418 (25 bp)
GCTTCTCCGTCGCTCTTTTGGTCGT
NONE
Os.47999.3.A1_at--495--10554Chr04:4088396..4088420 (25 bp)
TTCTCCGTCGCTCTTTTGGTCGTCG
NONE
Os.47999.3.A1_at--15--9294Chr04:4088399..4088423 (25 bp)
TCCGTCGCTCTTTTGGTCGTCGGTG
NONE
Os.47999.3.A1_at--115--42517Chr11:26544932..26545111 (25 bp)
CCGTCGCTCTTTTGGTCGTCGGTGA
NONE
Os.47999.3.A1_at--504--40117Chr11:26544933..26545112 (25 bp)
CGTCGCTCTTTTGGTCGTCGGTGAG
NONE
Os.47999.3.A1_at--315--72118Chr11:26544934..26545113 (25 bp)
GTCGCTCTTTTGGTCGTCGGTGAGT
NONE
Os.47999.3.A1_at--135--93518Chr11:26544935..26545114 (25 bp)
TCGCTCTTTTGGTCGTCGGTGAGTT
NONE
Os.47999.3.A1_at--611--41330Chr11:26545096..26545115 (20 bp)
CGCTCTTTTGGTCGTCGGTGAGTTC
NONE
Os.47999.3.A1_at--792--9418Chr12:10566431..10566727 (25 bp)
TCGTCCCGGTGCCTTCCGTTTGCGT
NONE
Target Sequence 
GTTGCTTCTCCGTCGCTCTTTTGGTCGTCGGTGAGTTCGCCGTGCCGCCCGCTTCGTCCCGGTGCCTTCCGTTTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47999.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis