Browse Element(s) Details


Os.47999.3.A1_x_at

Description gb:NM_195318.1
DB_XREF= gi:37531995
TID=Os.47999.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47999 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1159_D09.32 (OJ1159_D09.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0005F01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g447105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g339203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g063102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g069902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g426502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g289802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g201291/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g114541/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g032501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g210591/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g010501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g176101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g266201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g051201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g588201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g267601/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g199001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g289501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g097101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g391901/11retrotransposon, putative, centromere-specific
LOC_Os04g085401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g224101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g268601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44680Os.52661.1.S1_at9/1111+26508551..26514533expressed protein
LOC_Os11g44690OsAffx.31477.1.S1_at11/1111+26517623..26520782Protein kinase domain containing protein, expressed
LOC_Os11g44700OsAffx.7414.1.S1_at9/1111+26523038..26527248expressed protein
LOC_Os11g44710Os.47999.3.A1_at6/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.3.A1_x_at5/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.45173.1.S1_x_at3/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710Os.47999.2.A1_x_at2/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44710OsAffx.20733.1.A1_x_at1/1111+26534184..26544111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44720Os.27691.1.S1_x_at1/1111+26550340..26555423retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44730NANA11+26557577..26564307retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44740NANA11+26566497..26568124retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47999.3.A1_x_at--793--81995Chr12:9144103..9144124 (22 bp)
GGAAGAGCTCTAGCGCCGTGTGCCC
NONE
Os.47999.3.A1_x_at--809--8159Chr12:20212121..20212145 (25 bp)
GGAAGACCGCCGTCGGGTTCGCAAG
NONE
Os.47999.3.A1_x_at--402--76726Chr12:20212135..20212159 (25 bp)
GGGTTCGCAAGGTCGTCGCCGTCCT
NONE
Os.47999.3.A1_x_at--116--8057Chr12:20212182..20212206 (25 bp)
GGAGACCGCCGGAGCTTCATCGCCG
NONE
Os.47999.3.A1_x_at--806--6674Chr04:4088391..4088415 (25 bp)
GTTGCTTCTCCGTCGCTCTTTTGGT
NONE
Os.47999.3.A1_x_at--314--72118Chr11:26544934..26545113 (25 bp)
GTCGCTCTTTTGGTCGTCGGTGAGT
NONE
Os.47999.3.A1_x_at--337--95538Chr11:26545096..26545118 (23 bp)
TCTTTTGGTCGTCGGTGAGTTCGCC
NONE
Os.47999.3.A1_x_at--793--9418Chr12:10566431..10566727 (25 bp)
TCGTCCCGGTGCCTTCCGTTTGCGT
NONE
Os.47999.3.A1_x_at--342--7797Chr11:26545138..26545162 (25 bp)
GGTGCCTTCCGTTTGCGTTCTCGCG
NONE
Os.47999.3.A1_x_at--938--73717Chr10:6239272..6239295 (24 bp)
GTGACGTCATTGCTGGCGTCATCAA
NONE
Os.47999.3.A1_x_at--541--95918Chr11:25181552..25181571 (20 bp)
TCATTGCTGGCGTCATCAAGGCCGT
LOC_Os11g42650
Target Sequence 
GGAAGAGCTCTAGCGCCGTGTGCCCTAGCTTCGCCGTCGCCGCCGCCGCTCCAGCCGTGCGCCGCCGTCGTTTCAGCCGT
CGCCGTCGCTCGGGAAGACCGCCGTCGGGTTCGCAAGGTCGTCGCCGTCCTCGTCCGCCCCTTCGCAGCCGCCGGAGACC
GCCGGAGCTTCATCGCCGTCGTCAACCCGAAGGTTCCCGCCGCTTCCTCCTCGTCGCCGTCGCCGTCCGTTGCTTCTCCG
TCGCTCTTTTGGTCGTCGGTGAGTTCGCCGTGCCGCCCGCTTCGTCCCGGTGCCTTCCGTTTGCGTTCTCGCGCCGCCGT
TCGCCGGCAAGCGTGCGCCGCCCGAGCCGTCTGCCTCGCCGAGCCGCCGCCGCCGTCGGTGACGTCATTGCTGGCGTCAT
CAAGGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47999.3.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis