Browse Element(s) Details


Os.48042.1.S1_at

Description gb:AK111569.1
DB_XREF= gi:37988232
TID=Os.48042.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48042 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071E13, full insert sequence.
FL= gb:AK111569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4384011/11zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43814Os.54774.1.S1_x_at1/113+24511161..24511790retrotransposon, putative, centromere-specific
LOC_Os03g43820Os.57025.1.S1_at11/113+24519125..24519925pectinesterase inhibitor domain containing protein, expressed
LOC_Os03g43830OsAffx.13333.1.S1_at11/113+24521452..24522012hypothetical protein
LOC_Os03g43840Os.48042.1.S1_at11/113+24528744..24533424zinc finger protein, putative, expressed
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed
LOC_Os03g43860Os.8342.1.S1_at11/113+24550991..24554575SNF7 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0008219biological_processcell death
GO:0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48042.1.S1_at--1052--5691Chr03:24529597..24529621 (25 bp)
GACTTTGATGTATCCATATGGCGCA
LOC_Os03g43840
Os.48042.1.S1_at--1025--271Chr03:24529582..24529606 (25 bp)
ATATGGCGCACCTTCTGTCAAATGT
LOC_Os03g43840
Os.48042.1.S1_at--314--10131Chr03:24529553..24529577 (25 bp)
TATGCCATTATATCACAAACACCGG
LOC_Os03g43840
Os.48042.1.S1_at--1058--3351Chr03:24529432..24529558 (25 bp)
CACCGGAATGAATACTGTGGCACCC
LOC_Os03g43840
Os.48042.1.S1_at--271--3031Chr03:24529396..24529420 (25 bp)
AATGCCTACATCAAGTGGATCTTCA
LOC_Os03g43840
Os.48042.1.S1_at--616--9351Chr03:24529223..24529247 (25 bp)
TCGACCCCAGAATGTAACCGTTGTT
LOC_Os03g43840
Os.48042.1.S1_at--601--5971Chr03:24529195..24529219 (25 bp)
GAGAACCCTATGACTGTTGATGAAA
LOC_Os03g43840
Os.48042.1.S1_at--145--3111Chr03:24529024..24529048 (25 bp)
AATAGCAGCGTATTGTCTGTACCTT
LOC_Os03g43840
Os.48042.1.S1_at--171--51Chr03:24529013..24529037 (25 bp)
ATTGTCTGTACCTTGTTACATCCTT
LOC_Os03g43840
Os.48042.1.S1_at--340--9851Chr03:24528946..24528970 (25 bp)
TACACTGGTGTTTGGTTGACCATTG
LOC_Os03g43840
Os.48042.1.S1_at--48--10171Chr03:24528763..24528787 (25 bp)
TATACGTACCGTGCAACATGATTGA
LOC_Os03g43840
Target Sequence 
GACTTTGATGTATCCATATGGCGCACCTTCTGTCAAATGTGCCATATGCCATTATATCACAAACACCGGAATGAATACTG
TGGCACCCACGCCATCTCCAATGCCTACATCAAGTGGATCTTCATATAANGCCCCCCCAAGTGGATCTTCATATAATGCC
CCCCCACCAACTTCAGCTCCCACATCTCGACCCCAGAATGTAACCGTTGTTGNCGAGAACCCTATGACTGTTGATGAAAA
GGGTAAACTGGTTAGCAATGTTGTAGTTGGAGTTACAACTGGGAAATAGCAGCGTATTGTCTGTACCTTGTTACATCCTT
GATTTGTACCACTAAATACGTGAAGATGGGAATACCATGTATTACACTGGTGTTTGGTTGACCATTGAAGAACNAAAATA
CAAATGTTTTTTGGAATCTTGCAAAGGAAAGNATGAACGCCTAAAGTTGTATTTTGTATCTGTTGATTCTTTTCTTTGTA
TATGAGCTCTATTAGACTATATTGTGATAGAAGAATGATGGAATGACAAAGCAGTGTCACGTAGTTATACGTACCGTGCA
ACATGATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis