Browse Element(s) Details


Os.4822.1.S1_at

Description gb:AK100080.1
DB_XREF= gi:32985289
TID=Os.4822.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001M24, full insert sequence.
FL= gb:AK061796.1 gb:AK100080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0857011/11AUX/IAA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08530NANA5+4631245..4636225NPH3 family protein, expressed
LOC_Os05g08540Os.5609.1.S1_at10/115+4638681..4640608oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os05g08550NANA5+4641642..4642491hypothetical protein
LOC_Os05g08560Os.25368.1.S1_at11/115+4647142..4650404transposon protein, putative, unclassified, expressed
LOC_Os05g08570Os.4822.1.S1_at11/115+4659483..4662516AUX/IAA family protein, expressed
LOC_Os05g08580OsAffx.14592.1.S1_at11/115+4677327..4678451hypothetical protein
LOC_Os05g08590OsAffx.14593.1.S1_at11/115+4680948..4681319hypothetical protein
LOC_Os05g08600Os.10119.1.S1_a_at11/115+4682716..4686676pre-mRNA splicing factor PRP38 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4822.1.S1_at--51--751Chr05:4660095..4660119 (25 bp)
ATGTTTGTGGAGACCTGCCAACGTC
LOC_Os05g08570
Os.4822.1.S1_at--419--8871Chr05:4659903..4659927 (25 bp)
TGATGAGTCGCAAATCTCTGCTCCT
LOC_Os05g08570
Os.4822.1.S1_at--1135--5411Chr05:4659858..4659882 (25 bp)
GAAGCCATCTTTGCTTGCTGAGGTT
LOC_Os05g08570
Os.4822.1.S1_at--1124--9111Chr05:4659843..4659867 (25 bp)
TGCTGAGGTTTTTCCATGTCTGTGA
LOC_Os05g08570
Os.4822.1.S1_at--1154--511Chr05:4659801..4659825 (25 bp)
ATCGACTTCGACTTTTGGTTCCATC
LOC_Os05g08570
Os.4822.1.S1_at--364--7911Chr05:4659785..4659809 (25 bp)
GGTTCCATCGTGCTATTGAGTTTCA
LOC_Os05g08570
Os.4822.1.S1_at--758--10011Chr05:4659744..4659768 (25 bp)
TAGCTTGTAGCTTTGTTACCAGTCA
LOC_Os05g08570
Os.4822.1.S1_at--48--10471Chr05:4659729..4659753 (25 bp)
TTACCAGTCAGTAGTCTCTCCATAT
LOC_Os05g08570
Os.4822.1.S1_at--799--9851Chr05:4659676..4659700 (25 bp)
TACACCCATAGATTGTTTTCTCGAT
LOC_Os05g08570
Os.4822.1.S1_at--700--2451Chr05:4659647..4659671 (25 bp)
AAAATTGGTCTCACTCACTGAGCCC
LOC_Os05g08570
Os.4822.1.S1_at--252--5671Chr05:4659613..4659637 (25 bp)
GACATGCTTTCTACCACTAGTTTGT
LOC_Os05g08570
Target Sequence 
ATGTTTGTGGAGACCTGCCAACGTCTTCGTCTCATGAAAAGCTCTGAAGCAGTCAATTTAGCACCAAGATCTGCTTGATG
AGTCGCAAATCTCTGCTCCTGTCTTTGAGAAGCATGAGAGGAAGCCATCTTTGCTTGCTGAGGTTTTTCCATGTCTGTGA
GAGAAATGTGTACAGTCATCGACTTCGACTTTTGGTTCCATCGTGCTATTGAGTTTCAGAAAAGAAATGGTTTTTAGCTT
GTAGCTTTGTTACCAGTCAGTAGTCTCTCCATATAGATGAGCGAAGCGGTGATGCTTTAAAATACACCCATAGATTGTTT
TCTCGATAAATAAAATTGGTCTCACTCACTGAGCCCCTGTTCTTCGACATGCTTTCTACCACTAGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis