Browse Element(s) Details


Os.4868.1.S1_at

Description gb:AK102891.1
DB_XREF= gi:32988100
TID=Os.4868.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4868 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0094H06.13 (OSJNBa0094H06.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033112M22, full insert sequence.
FL= gb:AK059119.1 gb:AK102891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3230011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32270OsAffx.11282.1.S1_at11/111+18018728..18020523hypothetical protein
LOC_Os01g32280Os.18538.1.S1_at11/111+18023993..18033217integral membrane family protein, putative, expressed
LOC_Os01g32300Os.4868.1.S1_at11/111+18035674..18040300expressed protein
LOC_Os01g32310OsAffx.23472.1.S1_at11/111+18041014..18041487hypothetical protein
LOC_Os01g32320OsAffx.19542.3.S1_x_at3/111+18057922..18061809retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4868.1.S1_at--196--951Chr01:18039741..18039765 (25 bp)
AGGAAACCTCTAGCTCTAGCGGGAG
LOC_Os01g32300
Os.4868.1.S1_at--945--8871Chr01:18039835..18039859 (25 bp)
TGATGGTGATTCAGCCAGCTCTGGG
LOC_Os01g32300
Os.4868.1.S1_at--868--6071Chr01:18039890..18039914 (25 bp)
GAGTTTTCTTGCTGTGTATGCCATG
LOC_Os01g32300
Os.4868.1.S1_at--919--10131Chr01:18039906..18039930 (25 bp)
TATGCCATGGTTCACAATTTTACAC
LOC_Os01g32300
Os.4868.1.S1_at--803--9471Chr01:18039997..18040021 (25 bp)
TCTGTTGTGATCTTATTCTGCTGTA
LOC_Os01g32300
Os.4868.1.S1_at--166--3831Chr01:18040014..18040038 (25 bp)
CTGCTGTAATTTGTTTGTTCTCCTC
LOC_Os01g32300
Os.4868.1.S1_at--245--6731Chr01:18040030..18040054 (25 bp)
GTTCTCCTCTTGGTTAGTCTGCTAT
LOC_Os01g32300
Os.4868.1.S1_at--606--6831Chr01:18040055..18040079 (25 bp)
GTTTCTTAGATCTAGCCTGGAGCAT
LOC_Os01g32300
Os.4868.1.S1_at--778--4991Chr01:18040100..18040124 (25 bp)
GCATGATGGATTTTCTTCCCAAATA
LOC_Os01g32300
Os.4868.1.S1_at--832--6891Chr01:18040226..18040250 (25 bp)
GTATCTGCCCACTTTTTGTATCGTA
LOC_Os01g32300
Os.4868.1.S1_at--108--10811Chr01:18040241..18040265 (25 bp)
TTGTATCGTACTTGCTTTGCTTTGC
LOC_Os01g32300
Target Sequence 
AGGAAACCTCTAGCTCTAGCGGGAGCAGCAGCAGCAGTAGTAGCAGTGGAAGTGGGAGTGGTAGTGGAAGCAGCAGCAGT
GATAGTGACGGCAGTGATGGTGATTCAGCCAGCTCTGGGGGTGACGTTGATATATAAGTTTGGTGTACAGAGTTTTCTTG
CTGTGTATGCCATGGTTCACAATTTTACACCAGTATCAGGAGGTGTAAGCCTTGAATGTTTAACTCATAGTTCACAGGTA
ACAAAATTAAGTTTCTTCTGTTGTGATCTTATTCTGCTGTAATTTGTTTGTTCTCCTCTTGGTTAGTCTGCTATGTTTCT
TAGATCTAGCCTGGAGCATAGCATTTGTATGAAACCTTTGCATGATGGATTTTCTTCCCAAATATGGGATATATTTTCTC
TTGTTTTGAAGTACAGAACGGCATATATTNTGATATGTAGACATACATAGTGTGCACCATGTTGTGGGTTAGTTGTTTGA
TGGAAGTATCTGCCCACTTTTTGTATCGTACTTGCTTTGCTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis