Browse Element(s) Details


Os.49466.1.S1_at

Description gb:AK099946.1
DB_XREF= gi:32985155
TID=Os.49466.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123C17, full insert sequence.
FL= gb:AK099946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4343011/11Thaumatin-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43390NANA12+26888574..26889098Thaumatin-like protein precursor, putative
LOC_Os12g43400OsAffx.20103.1.S1_at10/1112+26890545..26891096hypothetical protein
LOC_Os12g43410Os.6867.1.S1_x_at3/1112+26898672..26899691Thaumatin-like protein precursor, putative
LOC_Os12g43430Os.49466.1.S1_at11/1112+26913303..26914097Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43440Os.25329.1.A1_at11/1112+26922547..26923293Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49466.1.S1_at--935--8411Chr12:26913776..26913800 (25 bp)
GGCCGGACAGGCTGCAACTTCGACG
LOC_Os12g43430
Os.49466.1.S1_at--177--8131Chr12:26913772..26913796 (25 bp)
GGACAGGCTGCAACTTCGACGGCGC
LOC_Os12g43430
Os.49466.1.S1_at--450--5831Chr12:26913567..26913591 (25 bp)
GACCTGCAGGGACAGCAGATGCCCC
LOC_Os12g43430
Os.49466.1.S1_at--985--5611Chr12:26913521..26913545 (25 bp)
GACAACAGCAAGACGCACGCGTGCA
LOC_Os12g43430
Os.49466.1.S1_at--849--9151Chr12:26913467..26913491 (25 bp)
TGCCCATAGATCTTCTCACCTAATT
LOC_Os12g43430
Os.49466.1.S1_at--789--3051Chr12:26913441..26913465 (25 bp)
AATTAACTTGATCATGGTCATGGAT
LOC_Os12g43430
Os.49466.1.S1_at--806--7811Chr12:26913426..26913450 (25 bp)
GGTCATGGATGATCTATGGCTAATA
LOC_Os12g43430
Os.49466.1.S1_at--792--611Chr12:26913394..26913418 (25 bp)
ATGCGTGCACGCATTAGCTGGCTGC
LOC_Os12g43430
Os.49466.1.S1_at--1001--3911Chr12:26913377..26913401 (25 bp)
CTGGCTGCTATAGATATTGATATAT
LOC_Os12g43430
Os.49466.1.S1_at--243--51Chr12:26913362..26913386 (25 bp)
ATTGATATATATGTCCGTGACGTAT
LOC_Os12g43430
Os.49466.1.S1_at--220--771Chr12:26913352..26913376 (25 bp)
ATGTCCGTGACGTATGCATGCATGT
LOC_Os12g43430
Target Sequence 
GGCCGGACAGGCTGCAACTTCGACGGCGCCGGCAGGGGCGGCTGCGCCACCGGCGACTGCGGCGGCGCGCTGTCGTGCAG
CCTCTCCGGGCGGCCGCCGATGACGCTGGCGGAGTTCACCCTCGGCGGCAGCCAGGACTTCTACGACCTGTCGGTGATCG
ACGGGTACAACGTCGCCATGAGCTTCTCCTGCAGCTCCGGCGTGGGGCTGACCTGCAGGGACAGCAGATGCCCCGACGCT
TACCTGTTCCCCAGCGACAACAGCAAGACGCACGCGTGCAGGGGAAACAGCAACTACCAAGTCGTCTTCTGCCCATAGAT
CTTCTCACCTAATTAAATTAACTTGATCATGGTCATGGATGATCTATGGCTAATATTGCAGCATGCGTGCACGCATTAGC
TGGCTGCTATAGATATTGATATATATGTCCGTGACGTATGCATGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis