Browse Element(s) Details


Os.25329.1.A1_at

Description gb:AK069182.1
DB_XREF= gi:32979206
TID=Os.25329.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009L15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009L15, full insert sequence.
FL= gb:AK069182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4344011/11Thaumatin-like protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43410Os.6867.1.S1_x_at3/1112+26898672..26899691Thaumatin-like protein precursor, putative
LOC_Os12g43430Os.49466.1.S1_at11/1112+26913303..26914097Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43440Os.25329.1.A1_at11/1112+26922547..26923293Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25329.1.A1_at--705--7551Chr12:26922997..26923021 (25 bp)
GGGCCGGACCGGGTGCAGCTTCGAC
LOC_Os12g43440
Os.25329.1.A1_at--753--3871Chr12:26922927..26922951 (25 bp)
CTGTCGTGCAGGCTGTCCGGGCAGC
LOC_Os12g43440
Os.25329.1.A1_at--1--8231Chr12:26922861..26922885 (25 bp)
GGCAACCGGGACTTCTACAACCTGT
LOC_Os12g43440
Os.25329.1.A1_at--363--3251Chr12:26922859..26922883 (25 bp)
CAACCGGGACTTCTACAACCTGTCG
LOC_Os12g43440
Os.25329.1.A1_at--672--9291Chr12:26922735..26922759 (25 bp)
TCCGACGATTCCAAGCTGCGCTCCT
LOC_Os12g43440
Os.25329.1.A1_at--243--6531Chr12:26922671..26922695 (25 bp)
GATTTCATGCATATGAACCTACTAC
LOC_Os12g43440
Os.25329.1.A1_at--1020--4951Chr12:26922663..26922687 (25 bp)
GCATATGAACCTACTACTATATATA
LOC_Os12g43440
Os.25329.1.A1_at--614--2411Chr12:26922593..26922617 (25 bp)
AAAACGAACGTGATCCAGAATTGCT
LOC_Os12g43440
Os.25329.1.A1_at--1011--5451Chr12:26922588..26922612 (25 bp)
GAACGTGATCCAGAATTGCTATATG
LOC_Os12g43440
Os.25329.1.A1_at--605--7391Chr12:26922584..26922608 (25 bp)
GTGATCCAGAATTGCTATATGTCAT
LOC_Os12g43440
Os.25329.1.A1_at--1130--191Chr12:26922550..26922574 (25 bp)
ATTTGGGAATGGAATCTTACAGATT
LOC_Os12g43440
Target Sequence 
GGGCCGGACCGGGTGCAGCTTCGACGGCNCCGGCCGCGGCAGGTGCGCCACCGGCNACTGCGGCGGCGCGCTGTCGTGCA
GGCTGTCCGGGCAGCCGCCGCTGACGCTGGCGGAGTTCACGCTGGGGACGTCCGGCGGCAACCGGGACTTCTACAACCTG
TCGGTGATCGACGGGTACAACGTCGCCATGAGCTTCTCCTGCAGCTCCGGCGTGACGCTGACGTGCAGGGAGAGGAGCTG
CCCGGACGCGTACCAGTACCCCTCCGACGATTCCAAGCTGCGCTCCTGCAACGGCAACAGCAACTACCGAGTCGTCTTCT
GCCCATGATTTCATGCATATGAACCTACTACTATATATATACTTCTACTAAACNGTATCAGGGAAAATAATAAGAACATN
CAATAAAACGAACGTGATCCAGAATTGCTATATGTCATTCGAANNAAATTTGGGAATGGAATCTTACAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25329.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis