Browse Element(s) Details


OsAffx.32171.3.S1_at

Description tigr:9640.m04281
TID=OsAffx.32171.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=perm1 protein - barley (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4349011/11Alpha-amylase/trypsin inhibitor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43440Os.25329.1.A1_at11/1112+26922547..26923293Thaumatin-like protein precursor, putative, expressed
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32171.3.S1_at--508--5771Chr12:26946658..26946682 (25 bp)
GACGAGATCGCCTCTGCTTAATTAA
LOC_Os12g43490
OsAffx.32171.3.S1_at--1007--6031Chr12:26946655..26946679 (25 bp)
GAGATCGCCTCTGCTTAATTAATTA
LOC_Os12g43490
OsAffx.32171.3.S1_at--539--4891Chr12:26946625..26946649 (25 bp)
GCTTATCGGCTTAATTAATTTCGTG
LOC_Os12g43490
OsAffx.32171.3.S1_at--298--3131Chr12:26946609..26946633 (25 bp)
AATTTCGTGTGCCTTGATCGATCAC
LOC_Os12g43490
OsAffx.32171.3.S1_at--132--7471Chr12:26946603..26946627 (25 bp)
GTGTGCCTTGATCGATCACTACTAG
LOC_Os12g43490
OsAffx.32171.3.S1_at--357--4431Chr12:26946599..26946623 (25 bp)
GCCTTGATCGATCACTACTAGTACA
LOC_Os12g43490
OsAffx.32171.3.S1_at--661--6391Chr12:26946594..26946618 (25 bp)
GATCGATCACTACTAGTACAATAAT
LOC_Os12g43490
OsAffx.32171.3.S1_at--1108--7031Chr12:26946579..26946603 (25 bp)
GTACAATAATTGACATGGCAACGCA
LOC_Os12g43490
OsAffx.32171.3.S1_at--353--10731Chr12:26946570..26946594 (25 bp)
TTGACATGGCAACGCATGCACTCGA
LOC_Os12g43490
OsAffx.32171.3.S1_at--607--8511Chr12:26946564..26946588 (25 bp)
TGGCAACGCATGCACTCGATGATCT
LOC_Os12g43490
OsAffx.32171.3.S1_at--541--4991Chr12:26946557..26946581 (25 bp)
GCATGCACTCGATGATCTCTCTTCG
LOC_Os12g43490
Target Sequence 
GACGAGATCGCCTCTGCTTAATTAATTAATTAAGCTTATCGGCTTAATTAATTTCGTGTGCCTTGATCGATCACTACTAG
TACAATAATTGACATGGCAACGCATGCACTCGATGATCTCTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32171.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis