Browse Element(s) Details


OsAffx.7879.1.S1_at

Description tigr:9640.m04283
TID=OsAffx.7879.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4351011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43450OsAffx.32170.1.S1_at11/1112+26926922..26927804P21 protein, putative, expressed
LOC_Os12g43460NANA12+26928862..26931908retrotransposon protein, putative, unclassified
LOC_Os12g43470NANA12+26934737..26938071transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7879.1.S1_at--170--8391Chr12:26952387..26952411 (25 bp)
GGCCCAGGGACGTACGGCTACAACG
LOC_Os12g43510
OsAffx.7879.1.S1_at--670--8071Chr12:26952394..26952418 (25 bp)
GGACGTACGGCTACAACGGCCCATT
LOC_Os12g43510
OsAffx.7879.1.S1_at--497--9851Chr12:26952405..26952429 (25 bp)
TACAACGGCCCATTGTACTTCGGCT
LOC_Os12g43510
OsAffx.7879.1.S1_at--850--11Chr12:26952416..26952440 (25 bp)
ATTGTACTTCGGCTCCGCGCCGACG
LOC_Os12g43510
OsAffx.7879.1.S1_at--638--9291Chr12:26952495..26952519 (25 bp)
TCCGCCGCGGCCATGTATATTTGAG
LOC_Os12g43510
OsAffx.7879.1.S1_at--1015--4511Chr12:26952498..26952522 (25 bp)
GCCGCGGCCATGTATATTTGAGATA
LOC_Os12g43510
OsAffx.7879.1.S1_at--50--3311Chr12:26952532..26952556 (25 bp)
TAATTACTCGGTTATAAATCCTAAT
LOC_Os12g43510
OsAffx.7879.1.S1_at--571--3131Chr12:26952558..26952582 (25 bp)
AATTAAGCTAGTATGCGGGAGCAGT
LOC_Os12g43510
OsAffx.7879.1.S1_at--534--4671Chr12:26952572..26952596 (25 bp)
GCGGGAGCAGTAAATTTACACTCAT
LOC_Os12g43510
OsAffx.7879.1.S1_at--57--2191Chr12:26952589..26952613 (25 bp)
ACACTCATGTTAATGTTAATTACCT
LOC_Os12g43510
OsAffx.7879.1.S1_at--348--151Chr12:26952607..26952631 (25 bp)
ATTACCTAAGTAATACTCCTATATA
LOC_Os12g43510
Target Sequence 
GGCCCAGGGACGTACGGCTACAACGGCCCATTGTACTTCGGCTCCGCGCCGACGAGAACCGGCTCGCCGGCCGGATCTTG
CGCCGCCGCCGCCGTGTTGCTCCTTCTCTCCGCCGCGGCCATGTATATTTGAGATAATAATTAGTTAATTACTCGGTTAT
AAATCCTAATTAATTAAGCTAGTATGCGGGAGCAGTAAATTTACACTCATGTTAATGTTAATTACCTAAGTAATACTCCT
ATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7879.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis