Browse Element(s) Details


Os.49527.1.S1_at

Description gb:AK110783.1
DB_XREF= gi:32995992
TID=Os.49527.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49527 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full insert sequence.
FL= gb:AK110783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0379011/11acyl-activating enzyme 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03770Os.4335.1.S1_at10/113+1663864..1667883NADH-ubiquinone oxidoreductase B18 subunit family protein, expressed
LOC_Os03g03790Os.49527.1.S1_at11/113+1684396..1686679acyl-activating enzyme 11, putative, expressed
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0016208molecular_functionAMP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49527.1.S1_at--440--10511Chr03:1685891..1685915 (25 bp)
TTCAAGGGCGAGTGGTTCCTGACCG
LOC_Os03g03790
Os.49527.1.S1_at--335--9491Chr03:1686159..1686183 (25 bp)
TCTGCCGCAAGCACATGGCGCGGTT
LOC_Os03g03790
Os.49527.1.S1_at--468--4531Chr03:1686190..1686214 (25 bp)
GCCCAAGAAGGTGGTCGTCTACGAC
LOC_Os03g03790
Os.49527.1.S1_at--454--7151Chr03:1686206..1686230 (25 bp)
GTCTACGACGCCATCCCGAGGAACG
LOC_Os03g03790
Os.49527.1.S1_at--129--7551Chr03:1686362..1686386 (25 bp)
GTGGCGCATGTCATGGCCGTGTCAA
LOC_Os03g03790
Os.49527.1.S1_at--336--4251Chr03:1686378..1686402 (25 bp)
CCGTGTCAAGGCTTTAGGGCAATCA
LOC_Os03g03790
Os.49527.1.S1_at--453--7611Chr03:1686394..1686418 (25 bp)
GGGCAATCACCAAAATGTCACCAAT
LOC_Os03g03790
Os.49527.1.S1_at--136--1691Chr03:1686413..1686437 (25 bp)
ACCAATCTTTATCGGTGAACCGGTG
LOC_Os03g03790
Os.49527.1.S1_at--594--7731Chr03:1686426..1686450 (25 bp)
GGTGAACCGGTGATATCACCTTTTG
LOC_Os03g03790
Os.49527.1.S1_at--506--10131Chr03:1686439..1686463 (25 bp)
TATCACCTTTTGCACGTAGGAATTT
LOC_Os03g03790
Os.49527.1.S1_at--796--6891Chr03:1686454..1686478 (25 bp)
GTAGGAATTTGGCACTACGCCTGCC
LOC_Os03g03790
Target Sequence 
TTCAAGGGCGAGTGGTTCCTGACCGGCGACGTCGGCGTCGTGCACGCCGACGGCTACATCGAGATCAAGGACAGGTCCAA
GGACGTGATCATCAGCGGCGGCGAGAACATCTGCAGCAAGGAGGTGGAGGAGGTGCTGTTCCAGCACCCCGCCGTCGCCG
ACGCGGCGGTGGTCGCCATGCCGCACCCGCACTGGGGCGAGACGCCGTGCGCGTTCGTCGTGGCGAGGGACAAGGCGGCC
GGGGTGTGCGAGGACGACGTCGTCGCGTTCTGCCGCAAGCACATGGCGCGGTTCATGGTGCCCAAGAAGGTGGTCGTCTA
CGACGCCATCCCGAGGAACGGCAACGGCAAGGTCGAGAAGAACTTGCTCCGGGAGGCGGCCAAGAAGCTGGCGCCGGCGG
CCGTGCCGGCGCAGAAGACGAAGGTGAAGACGACGACGACGACGGTCGGCGGCCGCCGCGGCGAGCACCCGGTGGCGCAT
GTCATGGCCGTGTCAAGGCTTTAGGGCAATCACCAAAATGTCACCAATCTTTATCGGTGAACCGGTGATATCACCTTTTG
CACGTAGGAATTTGGCACTACGCCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis