Browse Element(s) Details


Os.4339.1.S1_at

Description gb:AK058465.1
DB_XREF= gi:32968483
TID=Os.4339.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-A11, full insert sequence.
FL= gb:AK069816.1 gb:AK058465.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0383010/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03790Os.49527.1.S1_at11/113+1684396..1686679acyl-activating enzyme 11, putative, expressed
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4339.1.S1_at--937--6291Chr03:1698932..1698956 (25 bp)
GATGATGCCGATCCATTTGGTTCAA
LOC_Os03g03830
Os.4339.1.S1_at--250--2351Chr03:1698896..1698920 (25 bp)
AAAGCATCAGGTAGCAGGTCTCCCC
LOC_Os03g03830
Os.4339.1.S1_at--236--2611Chr03:1698792..1698816 (25 bp)
AACGCGTTGATGCAGTGGAACCTTT
LOC_Os03g03830
Os.4339.1.S1_at--432--7651Chr03:1698761..1698785 (25 bp)
GGGAGGTTGGTCATTCACCTTGTGC
LOC_Os03g03830
Os.4339.1.S1_at--508--10171Chr03:1698643..1698667 (25 bp)
TATCATATCTCTGGAACGGCTGCTG
LOC_Os03g03830
Os.4339.1.S1_at--271--8851Chr03:1698620..1698644 (25 bp)
TGATCATCTGCTGTTTGCCATTTGT
LOC_Os03g03830
Os.4339.1.S1_at--1127--411Chr03:1698490..1698514 (25 bp)
ATCATTTTGGGATCAGCTTCGGCGT
LOC_Os03g03830
Os.4339.1.S1_at--40--9451Chr03:1698472..1698496 (25 bp)
TCGGCGTTTCTGTTGTGTCGAAGTC
LOC_Os03g03830
Os.4339.1.S1_at--45--10371Chr03:1698444..1698468 (25 bp)
TTTTTTCCCTGCTGTATTATCACGG
LOC_Os03g03830
Os.4339.1.S1_at--55--171Chr03:1698429..1698453 (25 bp)
ATTATCACGGCTTGTACACTGGAGT
LOC_Os03g03830
Os.4339.1.S1_at--132--9871Chr03:1698415..1698439 (25 bp)
TACACTGGAGTGGTTTCTTAGCATC
NONE
Target Sequence 
GATGATGCCGATCCATTTGGTTCAAGTGGACCCTTTAAAGCATCAGGTAGCAGGTCTCCCCCCAAATTNTGATACACCAG
GGTACTATTTTTAGTGAATTCATTTGTCGATACAAGGCTGAATTCTTTTGAGGAAACTCCAACGCGTTGATGCAGTGGAA
CCTTTTTGAGTGGGAGGTTGGTCATTCACCTTGTGCGTTTTTCCTGTCCATTATACGGTACAAAGGGGACAGGTTTTGGT
ATATCCTTTGTATTTTGTAAAGTACACCGAGTTTGTTTTTGTTCATAGTTATCATATCTCTGGAACGGCTGCTGATCATC
TGCTGTTTGCCATTTGTTTCTTGGTTTGTACCATACCAAATGTTACAGTTGGTTTACTAAACTCCCACCATTTTGTAAGA
AACTGAGGACGATTTAGCATGTTTGCGATCTGTATGTGTAAAATCATTTTGGGATCAGCTTCGGCGTTTCTGTTGTGTCG
AAGTCTGTTTTTTTCCCTGCTGTATTATCACGGCTTGTACACTGGAGTGGTTTCTTAGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis