Browse Element(s) Details


Os.5378.2.S1_x_at

Description gb:AK110670.1
DB_XREF= gi:32995879
TID=Os.5378.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0490D09.11 (P0490D09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-G01, full insert sequence.
FL= gb:AK110670.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g038609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5378.2.S1_x_at--1068--291Chr03:1725354..1725378 (25 bp)
ATAGCTTCTCTGGAGTCTCTAGCAT
LOC_Os03g03860
Os.5378.2.S1_x_at--655--10011Chr03:1725338..1725359 (22 bp)
TAGCATTGCCGGAGCTGCAGGTCAA
LOC_Os03g03860
Os.5378.2.S1_x_at--1017--8531Chr03:1725106..1725130 (25 bp)
TGGAGCTGTTTAGTTCGGCATTCTT
LOC_Os03g03860
Os.5378.2.S1_x_at--389--8291Chr03:1725090..1725114 (25 bp)
GGCATTCTTCCCTGCTGTAATGAGA
LOC_Os03g03860
Os.5378.2.S1_x_at--388--3051Chr03:1725058..1725082 (25 bp)
AATCGAACATTCCAGTGCTAGCCAC
LOC_Os03g03860
Os.5378.2.S1_x_at--117--5691NONE
GACATTCCCGGAGTTGCGAGGTTGA
NONE
Os.5378.2.S1_x_at--393--5351Chr03:1724453..1724477 (25 bp)
GAAGAGTGCTCCTTTAGTGACTGCC
LOC_Os03g03860
Os.5378.2.S1_x_at--960--1111Chr03:1724438..1724462 (25 bp)
AGTGACTGCCCCATAAACTTGTAGC
LOC_Os03g03860
Os.5378.2.S1_x_at--938--7131Chr03:1724323..1724347 (25 bp)
GTCATATTGTTGTACTCACTGGATA
LOC_Os03g03860
Os.5378.2.S1_x_at--822--291Chr03:1724287..1724311 (25 bp)
ATAGCATTTGTTAGTTCTTCGACCA
LOC_Os03g03860
Os.5378.2.S1_x_at--307--6791NONE
GTTAGTTCTTCGACCATGTATTCAA
NONE
Target Sequence 
ATAGCTTCTCTGGAGTCTCTAGCATTGCCGGAGCTGCAGGTCAAGGACGACACTGATCTTTTCATTATTGATGAAGTGGG
TAAAATGGAGCTGTTTAGTTCGGCATTCTTCCCTGCTGTAATGAGAGTTATTGAATCGAACATTCCAGTGCTAGCCACAA
TTCCTGTACCAAGATTGGGCCGAGACATTCCCGGAGTTGCGAGGTTGAGGAATCATCCTGGAGCAGTTATTTACACCTTA
AATACTGGTAATAGGGATGCCATGAGAGAAGGTGTCTACAATCATTTGAGCAGTCTGTTGCAGAAAAGGTGATTTGCTGC
CCCCTGTGTGCTGCTTTTTGTATTTTTTATAATGCATAAAACTGCATTTTTCTTAATGCGAAAGAAGAGTGCTCCTTTAG
TGACTGCCCCATAAACTTGTAGCCTTGTAACAGAATGTTTGGTCAAATAAGAAAGTATTGTAGTACCTCAATATTTTTTT
CAAGTTCACCGACCTTGGAAAGGTGAGCAGACAGTCATATTGTTGTACTCACTGGATACATCTAAATATATAGCATTTGT
TAGTTCTTCGACCATGTATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5378.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis