Browse Element(s) Details


Os.50118.2.S1_x_at

Description gb:AY224472.1
DB_XREF= gi:29367470
TID=Os.50118.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.50118 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) isolate 27024 unknown mRNA.
PROD=unknown
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0386011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03800NANA3+1689651..1691275hypothetical protein
LOC_Os03g03810Os.10652.1.S1_at11/113+1692927..1693542Gamma-thionin homolog PPT precursor, putative, expressed
LOC_Os03g03820Os.4338.1.S1_at11/113+1694780..1698023Adenylate kinase, chloroplast precursor, putative, expressed
LOC_Os03g03830Os.4339.1.S1_at10/113+1698415..1706250EF hand family protein, expressed
LOC_Os03g03840NANA3+1708856..1709056hypothetical protein
LOC_Os03g03850OsAffx.24956.1.S1_at11/113+1711641..1712456GATA zinc finger family protein
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50118.2.S1_x_at--509--5631Chr03:1716447..1716471 (25 bp)
GACACAGACGAGATAGATAACCCCA
LOC_Os03g03860
Os.50118.2.S1_x_at--286--351Chr03:1716431..1716455 (25 bp)
ATAACCCCATCAAAGCTTACATCAG
LOC_Os03g03860
Os.50118.2.S1_x_at--438--9651Chr03:1716410..1716434 (25 bp)
TCAGAGCAATTCTTGTCATCGCCGG
LOC_Os03g03860
Os.50118.2.S1_x_at--97--7131Chr03:1716396..1716420 (25 bp)
GTCATCGCCGGTCTGTACGGACAGA
LOC_Os03g03860
Os.50118.2.S1_x_at--62--1351Chr03:1716374..1716398 (25 bp)
AGAGACGAAGCTCTGACCAACTCTT
LOC_Os03g03860
Os.50118.2.S1_x_at--221--2551Chr03:1716356..1716380 (25 bp)
AACTCTTCTCAGACCGCGAGGTGAA
LOC_Os03g03860
Os.50118.2.S1_x_at--100--4071Chr03:1716340..1716364 (25 bp)
CGAGGTGAAACCGATCCCCGCGTGG
LOC_Os03g03860
Os.50118.2.S1_x_at--471--6191Chr03:1716309..1716333 (25 bp)
GAGGAAGTCGAGTCGTCGTCGTCCT
LOC_Os03g03860
Os.50118.2.S1_x_at--159--3871Chr03:1716216..1716240 (25 bp)
CTGATCAACGAGTCGCTGCCGCGGG
LOC_Os03g03860
Os.50118.2.S1_x_at--373--9931Chr03:1716110..1716134 (25 bp)
TACTGGACGGGCTGTGGAACACCGT
LOC_Os03g03860
Os.50118.2.S1_x_at--35--8851Chr03:1716029..1716053 (25 bp)
TGATCGGCCGCGACATGAGCATGTC
LOC_Os03g03860
Target Sequence 
GACACAGACGAGATAGATAACCCCATCAAAGCTTACATCAGAGCAATTCTTGTCATCGCCGGTCTGTACGGACAGAGACG
AAGCTCTGACCAACTCTTCTCAGACCGCGAGGTGAAACCGATCCCCGCGTGGGTGTTCGAGGAAGTCGAGTCGTCGTCGT
CCTCCTCAGCCCCGGCCACCACCGACTGCGACGCTGCGGCCACCGGCGTCGACCACCGCCTCCTCTTCGACCTGATCAAC
GAGTCGCTGCCGCGGGTCGTCCAGTCGTCGACGACGCTGTGCGCGTTCAGCAGGTGGTACGGCGCGGCGCCGAGGAGATC
CCCCGGCGGCAAGAGGCTACTGGACGGGCTGTGGAACACCGTGCAGGCGTGGCTGGCGCCACCGCCGCCGACGGACTCGC
CCAACTCCGTGGACGAGCTGATCGGCCGCGACATGAGCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50118.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis