Browse Element(s) Details


Os.49020.1.A1_at

Description gb:AK102717.1
DB_XREF= gi:32987926
TID=Os.49020.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49020 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105E05, full insert sequence.
FL= gb:AK102717.1 gb:AK105632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0388011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03860Os.50118.1.S1_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.2.S1_x_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.50118.1.S1_a_at11/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_x_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.5378.2.S1_at9/113+1715643..1727032expressed protein
LOC_Os03g03860Os.30136.1.S1_at2/113+1715643..1727032expressed protein
LOC_Os03g03870NANA3+1729929..1735913Bromodomain containing protein, expressed
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49020.1.A1_at--245--8851Chr03:1747977..1748001 (25 bp)
TGATCAGCATCATGTGCCTCCAAGA
LOC_Os03g03880
Os.49020.1.A1_at--402--451Chr03:1748024..1748048 (25 bp)
ATCTCTGATGTCGTAATCGGCCTGA
LOC_Os03g03880
Os.49020.1.A1_at--438--3091Chr03:1748127..1748151 (25 bp)
AATATGCCGGCACGCCATCTAGAAG
LOC_Os03g03880
Os.49020.1.A1_at--909--5431Chr03:1748295..1748319 (25 bp)
GAACCGGTCTTTAGCAACCCGATTG
LOC_Os03g03880
Os.49020.1.A1_at--213--5851Chr03:1748357..1748381 (25 bp)
GACCATGATGACTGTTGTTCTTTCA
LOC_Os03g03880
Os.49020.1.A1_at--472--4451Chr03:1748383..1748407 (25 bp)
GCCTTTCATTGTTTTCAGTTCCTTA
LOC_Os03g03880
Os.49020.1.A1_at--171--3451Chr03:1748398..1748422 (25 bp)
CAGTTCCTTAATTCTGTTGCCAGTG
LOC_Os03g03880
Os.49020.1.A1_at--88--4431Chr03:1748416..1748440 (25 bp)
GCCAGTGTACATAGCATCATCGGTT
LOC_Os03g03880
Os.49020.1.A1_at--1033--411Chr03:1748431..1748455 (25 bp)
ATCATCGGTTGTGCTCTGCTTGGGC
LOC_Os03g03880
Os.49020.1.A1_at--341--8651Chr03:1748451..1748475 (25 bp)
TGGGCAGCAGCCATCAGACATGCAT
LOC_Os03g03880
Os.49020.1.A1_at--1099--1391Chr03:1748466..1748490 (25 bp)
AGACATGCATCAGTCCGGCCTGGAA
LOC_Os03g03880
Target Sequence 
TGATCAGCATCATGTGCCTCCAAGATCAGCCCCACGTCCGCCCAATCATCTCTGATGTCGTAATCGGCCTGAACCATGTC
GCAAGCCAGCCATATGTCCCTGAGCGCTCCTCAGTGTCGCTGAGTTCCCCAGCAAGGTGCGGGTCACCACAATATGCCGG
CACGCCATCTAGAAGGCGAGGCGGCAGAAGAGTTGCTCAGTATGCATAGCCTAGACTATATCCTTGTCTCAAAAGAACAG
CAAGATCTCAGTCTGGTGAGACGGGTAGATAGTTGAAACTGTCAAAAATGCCATATAGTCAAAGCCTTCTTGATTCAAGA
ACCGGTCTTTAGCAACCCGATTGACACAGTTTGCTGTGAGATTGGTGATAGTTTGAAGCTGACCATGATGACTGTTGTTC
TTTCATGCCTTTCATTGTTTTCAGTTCCTTAATTCTGTTGCCAGTGTACATAGCATCATCGGTTGTGCTCTGCTTGGGCA
GCAGCCATCAGACATGCATCAGTCCGGCCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49020.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis