Browse Element(s) Details


Os.7986.1.S1_at

Description gb:AY339372.1
DB_XREF= gi:33440011
TID=Os.7986.1
CNT=84
FEA=FLmRNA
TIER=FL+Stack
STK=29
UG=Os.7986 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) catalase mRNA, complete cds.
PROD=catalase
FL= gb:AB020502.1 gb:AK062174.1 gb:AY339372.1 gb:AK066378.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0391011/11Catalase-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0042744biological_processhydrogen peroxide catabolism
GO:0005739cellular_componentmitochondrion
GO:0005777cellular_componentperoxisome
GO:0004096molecular_functioncatalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7986.1.S1_at--836--1011Chr03:1766667..1766691 (25 bp)
AGGTACCGTTCATGGGATCCGGCAA
LOC_Os03g03910
Os.7986.1.S1_at--1064--931Chr03:1766531..1766555 (25 bp)
AGGCAAGACCGGTTCATCAAGAGAT
LOC_Os03g03910
Os.7986.1.S1_at--551--6031Chr03:1766511..1766535 (25 bp)
GAGATGGATCGACGCACTCTCTGAC
LOC_Os03g03910
Os.7986.1.S1_at--438--8631Chr03:1766301..1766325 (25 bp)
TGGGTCAGAAACTGGCGAGCCGTCT
LOC_Os03g03910
Os.7986.1.S1_at--220--9531Chr03:1766279..1766303 (25 bp)
TCTCAGCGCGAAGCCGAGCATGTAA
LOC_Os03g03910
Os.7986.1.S1_at--44--6671Chr03:1766240..1766264 (25 bp)
GTTGCAATCTGCTTCAGTCACGGAA
LOC_Os03g03910
Os.7986.1.S1_at--280--9671Chr03:1766211..1766235 (25 bp)
TCAGCCTCACTCTATCGGATAATAA
LOC_Os03g03910
Os.7986.1.S1_at--901--9891Chr03:1766176..1766200 (25 bp)
TACTCTAGCAATACCGATCGATCGA
LOC_Os03g03910
Os.7986.1.S1_at--191--731Chr03:1766127..1766151 (25 bp)
ATGATTTCTATCACCGCACAATTCG
LOC_Os03g03910
Os.7986.1.S1_at--314--5131Chr03:1766112..1766136 (25 bp)
GCACAATTCGTGTACCACCATCATG
LOC_Os03g03910
Os.7986.1.S1_at--421--1411Chr03:1766069..1766093 (25 bp)
AGACACGTTTCTCCTGATACTTCAT
LOC_Os03g03910
Target Sequence 
AGGTACCGTTCATGGGATCCGGCAAGGCAAGACCGGTTCATCAAGAGATGGATCGACGCACTCTCTGACCCTCGCCTCAC
CCACGAGATCAGGAGCATCTGGCTCTCCTACTGGTCTCAGGCTGACAGGTCTCTGGGTCAGAAACTGGCGAGCCGTCTCA
GCGCGAAGCCGAGCATGTAAGGAGATCGATCAGCGTTGCAATCTGCTTCAGTCACGGAAGGCCTCAGCCTCACTCTATCG
GATAATAATTGCTACTCATACTCTAGCAATACCGATCGATCGAGTCTATTTTGGAAAGAGGACATATATGATTTCTATCA
CCGCACAATTCGTGTACCACCATCATGTAATAATCTGTAACCTGAAGACACGTTTCTCCTGATACTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis