Browse Element(s) Details


Os.24297.1.A1_at

Description gb:AK103714.1
DB_XREF= gi:32988923
TID=Os.24297.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033137H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033137H24, full insert sequence.
FL= gb:AK103714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0393011/11polyA polymerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0003723molecular_functionRNA binding
GO:0004652molecular_functionpolynucleotide adenylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24297.1.A1_at--24--6231Chr03:1777521..1777545 (25 bp)
GATGGCTAAGCCGTAGTCACTCAAC
LOC_Os03g03930
Os.24297.1.A1_at--995--451Chr03:1777482..1777506 (25 bp)
ATCTCTCCATTCCATGATTCCATAA
LOC_Os03g03930
Os.24297.1.A1_at--974--6571Chr03:1777467..1777491 (25 bp)
GATTCCATAATCAACGCGCTCAGCG
LOC_Os03g03930
Os.24297.1.A1_at--870--7811Chr03:1777416..1777440 (25 bp)
GGTCAGTTGGCCACCATACAATGCA
LOC_Os03g03930
Os.24297.1.A1_at--824--3011Chr03:1777397..1777421 (25 bp)
AATGCAGGCGAACTTTTACCGCAGC
LOC_Os03g03930
Os.24297.1.A1_at--241--10471Chr03:1777382..1777406 (25 bp)
TTACCGCAGCTAAACTCACGTGGAT
LOC_Os03g03930
Os.24297.1.A1_at--1012--731Chr03:1777346..1777370 (25 bp)
ATGTTATTGCCCAAGTGCCTGCCTT
LOC_Os03g03930
Os.24297.1.A1_at--1047--4271Chr03:1777329..1777353 (25 bp)
CCTGCCTTGACGTCTTTTTGTAGTA
LOC_Os03g03930
Os.24297.1.A1_at--622--131Chr03:1777252..1777276 (25 bp)
ATTCACTTTGGCTTGTTAGTCTCCG
LOC_Os03g03930
Os.24297.1.A1_at--151--10071Chr03:1777236..1777260 (25 bp)
TAGTCTCCGCGTACTGTACCAATGT
LOC_Os03g03930
Os.24297.1.A1_at--1095--5531Chr03:1777162..1777186 (25 bp)
GAAACTGTCGCCATGGTTACTTGGG
LOC_Os03g03930
Target Sequence 
GATGGCTAAGCCGTAGTCACTCAACAAAAATTAGNCAGGATCTCTCCATTCCATGATTCCATAATCAACGCGCTCAGCGC
ATCGAAGTGCTTGGGCGTGCAGGATGGTCAGTTGGCCACCATACAATGCAGGCGAACTTTTACCGCAGCTAAACTCACGT
GGATGCTGGAGAATGATGTTATTGCCCAAGTGCCTGCCTTGACGTCTTTTTGTAGTAGAACTGAGTCTAGTGCGTAGATA
GTACTACCAGATAATTGTAACCTTATATTATTCACTTTGGCTTGTTAGTCTCCGCGTACTGTACCAATGTTGAGTCGTAC
TGCCCNTTGAACTTTTGAGCTTAGGTGAACTGANAGTTTGAAACTGTCGCCATGGTTACTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24297.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis