Browse Element(s) Details


OsAffx.24957.1.S1_at

Description tigr:9631.m00310
TID=OsAffx.24957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0398011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24957.1.S1_at--552--991Chr03:1793882..1793906 (25 bp)
AGGAGGCCTACTGGCAGGCGGCCGA
LOC_Os03g03980
OsAffx.24957.1.S1_at--173--4391Chr03:1794154..1794178 (25 bp)
GCCAAGAAGCGACAGGCCCGCACCG
LOC_Os03g03980
OsAffx.24957.1.S1_at--697--3811Chr03:1794234..1794258 (25 bp)
CTCCATCATCGAGGCACGGTCAGTG
LOC_Os03g03980
OsAffx.24957.1.S1_at--889--3551Chr03:1794237..1794261 (25 bp)
CATCATCGAGGCACGGTCAGTGGAG
LOC_Os03g03980
OsAffx.24957.1.S1_at--910--4131Chr03:1794328..1794349 (22 bp)
CGCCTCAAGGTCTCGTACAAGGCTT
LOC_Os03g03980
OsAffx.24957.1.S1_at--469--6191Chr03:1794735..1794759 (25 bp)
GAGGAAAAGCCTGGGCTGACTCTGC
LOC_Os03g03980
OsAffx.24957.1.S1_at--124--2431Chr03:1794739..1794763 (25 bp)
AAAAGCCTGGGCTGACTCTGCATCA
LOC_Os03g03980
OsAffx.24957.1.S1_at--722--1671Chr03:1794742..1794766 (25 bp)
AGCCTGGGCTGACTCTGCATCAGTA
LOC_Os03g03980
OsAffx.24957.1.S1_at--652--3891Chr03:1794745..1794769 (25 bp)
CTGGGCTGACTCTGCATCAGTACAA
LOC_Os03g03980
OsAffx.24957.1.S1_at--651--8331Chr03:1794748..1794772 (25 bp)
GGCTGACTCTGCATCAGTACAAAGA
LOC_Os03g03980
OsAffx.24957.1.S1_at--690--5711Chr03:1794752..1794776 (25 bp)
GACTCTGCATCAGTACAAAGATATG
LOC_Os03g03980
Target Sequence 
AGGAGGCCTACTGGCAGGCGGCCGAGGGCCCCAAGTCGCGCTCCGCGCGCCGCCGCGAGGAGGACGCCGAGAAGCGCGCC
GAGGCGGCCGCACGCCGCGCGGAGAACCGCCGCCTCGCCGAGCTCGAGCAGCAGCAGCTCGCCGCCGCCGCGCGGCGCCC
CGACCGCAAGGCCGCACGCGTCGGCGGCCCCGTCGTCCCCAAGGTCACCGAGGCCGAGCTGCTGCGACGCCGGGAGGAGG
AGCGGATCCGCCTCGAGCGCGAGGCTGAGGCCGCCAAGAAGCGACAGGCCCGCACCGCCGAAGAGGAGGAGTACGAGCGC
GTCGTGCTCGTCGCCAACACCAACAGAGACGACTCCATCATCGAGGCACGGTCAGTGGAGGACGCCATCGTCAAGATGTC
CATCGCTGCCGAGCCTGCGCTACCACCGGATCGCCACCCCGAGCGCCGCCTCAAGGTCTCGTACAAGGCTTTTGAAGAAG
CAGAGCTAGCCAAACTCAAGGAGGAAAAGCCTGGGCTGACTCTGCATCAGTACAAAGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis