Browse Element(s) Details


Os.5425.1.S1_at

Description gb:AK100656.1
DB_XREF= gi:32985865
TID=Os.5425.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111G18, full insert sequence.
FL= gb:AK100656.1 gb:AK105699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g039209/11Ubiquitin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03880Os.49020.1.A1_at11/113+1743693..1748568Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os03g03890Os.56023.1.S1_at6/113+1751162..1754025serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
LOC_Os03g03900Os.11655.1.S1_at11/113+1754678..1759240RWP-RK domain containing protein, expressed
LOC_Os03g03910Os.7986.1.S1_at11/113+1765991..1769149Catalase-1, putative, expressed
LOC_Os03g03920Os.5425.1.S1_at9/113+1769942..1774716Ubiquitin family protein, expressed
LOC_Os03g03930Os.24297.1.A1_at11/113+1777041..1782663polyA polymerase family protein, expressed
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5425.1.S1_at--118--7791NONE
GGTGCTGGTGCAGGCAATACTAACC
NONE
Os.5425.1.S1_at--292--9711Chr03:1770564..1770588 (25 bp)
TCAACAATCTGATGAGCATGTTCAG
LOC_Os03g03920
Os.5425.1.S1_at--154--8811Chr03:1770517..1770536 (20 bp)
TGTTCCTAGTGCACCCAATGTTCCA
LOC_Os03g03920
Os.5425.1.S1_at--954--7331NONE
GTGCACCCAATGTTCCACCAGAAGA
NONE
Os.5425.1.S1_at--1116--251Chr03:1770349..1770373 (25 bp)
ATATGCAACACAACTAGCTCAGCTC
LOC_Os03g03920
Os.5425.1.S1_at--1048--2971Chr03:1770319..1770343 (25 bp)
AATGGGTTTCTTTGACACACAGGAG
LOC_Os03g03920
Os.5425.1.S1_at--466--7651Chr03:1770081..1770105 (25 bp)
GGGTTAACCTTTCCATACATGGTTG
LOC_Os03g03920
Os.5425.1.S1_at--129--3511Chr03:1770064..1770088 (25 bp)
CATGGTTGTCATGTCGTGATCGAGA
LOC_Os03g03920
Os.5425.1.S1_at--285--10231Chr03:1770031..1770055 (25 bp)
TATTGATGGTACTTTGGGTTGGTGT
LOC_Os03g03920
Os.5425.1.S1_at--224--6651Chr03:1769962..1769986 (25 bp)
GTTGTTTATGTTTACTTGCCTGCTC
LOC_Os03g03920
Os.5425.1.S1_at--113--10491Chr03:1769951..1769975 (25 bp)
TTACTTGCCTGCTCTTACAACCTAT
LOC_Os03g03920
Target Sequence 
GGTGCTGGTGCAGGCAATACTAACCTCAACAATCTGATGAGCATGTTCAGTGGGCTCGGTGCTGGTGGTGGCCTAGGTGT
TCCTAGTGCACCCAATGTTCCACCAGAAGANCTATATGCAACACAACTAGCTCAGCTCCAAGAAATGGGTTTCTTTGACA
CACAGGAGAACATTCGAGCTTTGATTGCTACAGCGGGAAATGTTCATGCTGCGGTGGAGCGACTTCTTGGGAATATTGGC
TGATAGACNGTTGTGATCGAAGATGTCCNCGACTTGTTACCTGTAGCTCAGATTGTAAGATTGTCTGGTTCATTGGTTTT
ATACCNNGTCAGATTCAAAGGCATCATCTAGGTACATGGTTTAGATGAATAAATGAGTCAAGTGGGTTAACCTTTCCATA
CATGGTTGTCATGTCGTGATCGAGATATTGGTGTATTGATGGTACTTTGGGTTGGTGTANATACATATTGAGCTATTGGT
GGTTACTGCAGTGTACATGACCGTTGTTTATGTTTACTTGCCTGCTCTTACAACCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis